RNA id: TU128143


Basic Information

Item Value
RNA id TU128143
length 1552
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id raver2
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13005568 ~ 13100445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGAAAGTGTTCTTATAGATATCTAATCTAAATATATATCTTCCCATGAATCTGGAACATGCTTGACATTATATAAAAGTGAAGTTGGGGCCTGAGATTGACACTGGGATTAAGttgtttatactgtatgttggcaAGGGCTGCCGAATGCTAAAACACCATGAGTTTTGGTCTTCAGTCTTAAAAGAAAACACCGTTATAGGCTACATCCCTCTCTGACAGCTAATGTCATATGAGAAGAAAATCTTGAcactttttgtcatttcatcACATCACCTACAATTTCTTTTGGGATGTTTTCTAATGGCTAACTTGTCCCATGCAATCAGTTTTTCTTTGGAAATAGAAGCTTGTACTTGCTTGGTTTGGTATCACAGGTAGGTCTGTGGCTGTGCTGCAAGTCCCAAATGATCAGCTTTTCTTAATGCACATTTGCATTTCTGGTTCTAAGCTTTTGAATAGTCTTTAGTCTccactgtttattttttaacaaaggaCTGCTTTGGATATATCAAATGATGGATATATCTTTAATTTAACTAATATTGCAATACTATCTTTATAACTGCCTCCCACAGTTTCAGTATGATAGTATTAAAGTATGTATATGTCACTTAATATCAGCCCCTTTCTTTATGAAGAAATGTTGAATGGTTGGACTCTATTATTTTGTTGTGCCTCTCTGTGCCATCAACTAGCTGTGACGTCCTCATGATGATTGTACACAAAGGGGCCTGATATCCCTGAAGTAACACAGCACAACGAAGCCTGCATACGCACAGGGCGAAGGATGCTCTTGAATCTTGTGTAACGCTGGTAATCTTAACCTGTTAGTGAGCCAGCTGCAGTTCAGGGcaaattctgtttttgtgtaaatgcagcccatttcttttgttttggtctttagTTGTAGAAATATGATATTGACATGAAAATGCAGTCCGTTTTATTTTTCGAGTGTTCATTTACATCACAACAGAAAATCTTACTTGTAGTCTTGTGTAGTTTAGTTGTaacatatataatttttttttttatagctgaaTCACTTCAGGTTAAAAACCAGATCTTTCTGTTCTGTGTAAACGGAGCCTCCTCTAAGCTTCAGTGTGTTGCCATTGTACCAGTACGCAGTCCGCGTATTACAGTGTCAGTGGTGAGGCTGGACTTAGCAatagtaagtgtgtgtgtgtgtgtgtgtgtgtgtgagacaaagCTCTGCAAAGTATTTCTGATTTTCTGACATGTTTTGTAGATTAAACTAGATTTGCTGTGCTTCTTGCTttgtaaactgtttttttttttgctttttaagtATGTGGATTTTAGTCTCACCTGAAACATACTGTAGATTTTGCAACATTTTATATCACACTGACATTGCTATTGTTTTACTGTGAATAAGGTAATTCTAGAGCAATTTTAGCATGCCTACTTACAACTGTAATATATGGAACAAACTGTTTTTAGTAGTTAATATATTGCATTTGGACTGACAGAACACGACAAacattgattttatttattttttcatggtTACCTTCCATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128141 lncRNA upstream 103133 12995235 ~ 12995654 (+) True G95002
TU128136 lncRNA upstream 232536 12865912 ~ 12866251 (+) True G94997
TU128119 lncRNA upstream 232946 12865015 ~ 12865841 (+) False ror1
TU127958 lncRNA upstream 655707 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA upstream 656926 12353673 ~ 12441861 (+) False lrp8
TU128168 lncRNA downstream 7351 13107689 ~ 13112320 (+) True G95027
TU128185 lncRNA downstream 45967 13146305 ~ 13146795 (+) True G95040
TU128265 lncRNA downstream 235396 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA downstream 235396 13335734 ~ 13342098 (+) False LOC120565776
TU128278 lncRNA downstream 272106 13372444 ~ 13375668 (+) True LOC120564967
XM_039810256.1 mRNA upstream 3381 13005568 ~ 13095406 (+) False raver2
XM_039811947.1 mRNA upstream 104023 12896287 ~ 12994764 (+) True cachd1
XM_039811948.1 mRNA upstream 104023 12937290 ~ 12994764 (+) False cachd1
XM_039812265.1 mRNA upstream 232945 12742805 ~ 12865842 (+) True ror1
XM_039811774.1 mRNA downstream 49512 13149850 ~ 13158641 (+) False ak4
XM_039811773.1 mRNA downstream 49513 13149851 ~ 13158641 (+) True ak4
XM_039811402.1 mRNA downstream 63367 13163705 ~ 13204369 (+) True dnajc6
XM_039811401.1 mRNA downstream 63367 13163705 ~ 13204369 (+) False dnajc6
XM_039811400.1 mRNA downstream 63367 13163705 ~ 13204369 (+) False dnajc6
TU127781 other upstream 1654254 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1850140 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2150541 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 2157543 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2938980 10074206 ~ 10159807 (+) False LOC120565490
TU128204 other downstream 72687 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 279060 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1519020 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1710030 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1710030 14810368 ~ 14914033 (+) False dennd1b

Expression Profile