RNA id: XR_005640174.1


Basic Information

Item Value
RNA id XR_005640174.1
length 5000
RNA type transcript
GC content 0.49
exon number 17
gene id raver2
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13005568 ~ 13100445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttCCCTCACACTTTTCACTCAGCTACCCAAGATGGCGGCAGCCCCATCCATCCAGCCGCCGAGCGTTCACTCTTCTATAGCCGGGGAAAGCGCACTTTCCCCGGAGATGGACAGCCCCGAGAGCAGGCAACCGGAGGATAAGGAGGCGGcggcagcaacaacaacacagcccTCCGACTCGGAGATTAGCCTCCGCGACCTGCCAGACCTGGAGCCGGAGGAGATCGAGAGGAGGCTGGCCAAAACTCGACAAGAGCTGAGCAACAGGAGGAAAATCCTCATTAAGAACCTGCCGCCTGACACCACTAACCAGGAAGTCCACGAGATTCTGAAAGAATATGAACTGAAGTACTGCTTTGTGGACCGTAACAAAGGCACAGCCTTTGTGACTTTGCTGAACGGGGACCAGGCTCAGGATGCCATCCGCTCCCTCCATCACAGCACTGTTCGGGGACGCTTGATCAACGTCACGCTGCAGCCCACCGACTCCCTTCTCTGCCTCACCAACCTGCCCCACACCTTCACTGCCCAGCAGTTAGAGGAGCTGGTACGTGCCTATGGGAACATCGAACGCTCCTTCCTGGTGTACAGCGAGCTGACGGGCCACTCCAAAGGATATGGGTTTGTTGAATACATGAAGAAGGATTCTGCTTCACGGGCCCGTTCTGAGCTGCTGGGCCGACCACTGGACGATCGCTCattgatggtgcagtggatggACGTCAACCAGCTGAGCCAAGAGGAGAACCTGCACTCGAAGTGTCTCTGTATAAACCGGCTGCCGCTGGACCTCTGTGACTCTGAAGAACTGACCCAGCTCTTCTCGGAAACCTACAAACCTGTCTTCTGCcagCTTGCTCAGGATGAGGGCAGCCCAGTGCGAGGCTTCGGTGTGGTGGAGTATGAGAACTCGGAGCAGGCGGAGGCTGTGCTGATAGAGATGGACCGAACACTGGTGGGAGGACAGGAGGTCCGTCTGTCACTCTGTACCCCCGGCACCTCAGGGAGAAGCACCCTGGCTGCACTCATCGCCGCCCAGGGTATGATTCTGAGTAATAGGAAAGGTCTGCTACCAGAACCCAACCTCGCCCAGCTGTTAACCAGTGTGACCAACCCTGCTGCCCTGCAGATCCTCATGAGGCCGTACCACACTGGGAAAAGAGGAGGGAAGTACGGACGTCACACCAGCCTGCCATTCCTCAGACCTCCTCTCACCACAGCTCTGCTCACACTGGGAAAAGCACACCAGAATGCTATGCTGGGTAATGGACTAGTCCTCCAGAACCTCTTGCACATGCAGCTCGCACAGCAACAGCTTCTTCACATCAAAGACAAACGCCTCAGCAACGTCTCCAGTCTGCTTGGGAACCCGTCCAGGCTGCTGATGCAGAAAGCTTTGTCTCTGCGGCCTCCAGGCCTTGTGTCGCTGGGGAAAGGCCTCCTGGGAGACTCCCCAACAGAGCTGGGCCAGGAGTCAATGCCATCCCACAATGCCACAGTAGTGGTATCAGCAGCAGGTGTGATGCCATACCTCCAGGGTCGAGCTGGAGGGGGAGAACTAAACAGCACCCATTCTATCTCCACAAACCCTTctgcttcctcttcttcttcctcctccatctcctgtgACAGGCAGCCAGCTCCTCCCGGGACCATGGTGAGCTCCCATCTGCAGGAACAGTGCTATTCCTTGGGTTTAAGTCACTCAGGCCTCGGTCCACCTCCACCTAAACCCCCTGGAGGAGTTTATACGTCAACAGGCCAGCGCCACAGCTCAGATGGCTGCCCCCTGGCTAGCATGgtAAGCAGTGGTCAGGGCTCTCTGCTGGGCGATCCTCCTAAAGAAGTGAGACTGCCCTCCAATCCTTATCTCAACCTGGCCAGTGTCATGCCAGGGATGGTTATGCAAGGGTCAGTGGGGAGTAAAGCACAGGGAGGACAGCCTGGCTCTGGGGTTTACGGCAGCTCGGTTGCTCCCGTCGTCTCCCAGGGTTCTGGCTCCTTCTCCCACAACGCAACAGCTACAACCACAGCTCAATACAGCACTGATACCTCCACTGATTACAGCCAGTACAACCAGGCCTACACACAGGAGGCCATGCAGCAGTGGTACCAGCACTACCAAGCTCAAGCTCAAGCTCAAGCTCAAGCTCAAGCTCACAACTACAGCACAGCTGCTCAGCAGGACAACACTGCCACAGACTACAGCAAGGagcacacacagGCTCCTCCGGTGACGACCTATGGGGATTACAGTTCCTACATGCAGGCAGTCACTCAGTACTACTCCCAGCCTGCAACAGCCAACCAGGCCTACGCCAGCAAGGAGGTAGATGTGTGTAAGCCTCTAGGAGTCTCTCTGCACACAGTCAGTAACGGCGCCGCCCCTCCCCCGGCCGTCCTACCAGCTGCTGCCGTGCTCCCAGCCTACAGCACCCTGCCATTAATGCCCGGCTTCCTGGGCGCGCCACACCCGGCGGCGGCCACGCCAAGccccgtcacacacacacacactgccgcCACTGACTGGAACACCTACTACTATAACCAGACGAGGGGCCATAAAAGGGAGTACCCTCAGCTGGCGGtgcaggaagtgacatcatcagATGGCGCTTACATCGGGCAGCACTCCCAAGGCCTGGGAGGGCAGTACGCTGACTACTTTAAGAGGAAGAGGCTCTAGTATGAACCAAACCACCTTAAAGCCTAAAGCTTATGGAAggaggcgcgcacacacacactgcgtcTGTTGGATGTCACAGCTCCCTCTAGTGGCCTTTCTGTGGCTGCCATTTTGCATCCCTACAGTAATGGGGGTAAGGAGAGACAGgctgaaagaaagagaggaatggAAAAACAACTCCAGCTGCCTTCACCCGCTCAGCCTGCAGGGAtttcttcttctatttttttttcttacaatttttgtagttgtgtgtctttctcccttttctgtctGCTTGGCCAGTGATGAGTGTTGTTTATGTCTGCCAGACTCCTGCATGTTGCACGTACCTGTagagctgtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgtatatgtCTCCTCTGCTCTCGTATTTGTATTAACTGGATGCTCGCACAACTTCTCCCAGTGTGATCCAAATCTATATGAATACAGGACActgtacactgtaaaaacaatgacagttctcttctttttttttactgcaggccaaataacaaacaaagcccccccccccttgttgCATGTGATGTCGTACGCCCGTCCTCTCTCTAggggtgttttgtttttaggcTGTACCAGAATGTGAAAGTGTTCTTATAGATATCTAATCTAAATATATATCTTCCCATGAATCTGGAACATGCTTGACATTATATAAAAGTGAAGTTGGGGCCTGAGATTGACACTGGGATTAAGttgtttatactgtatgttggcaAGGGCTGCCGAATGCTAAAACACCATGAGTTTTGGTCTTCAGTCTTAAAAGAAAACACCGTTATAGGCTACATCCCTCTCTGACAGCTAATGTCATATGAGAAGAAAATCTTGAcactttttgtcatttcatcACATCACCTACAATTTCTTTTGGGATGTTTTCTAATGGCTAACTTGTCCCATGCAATCAGTTTTTCTTTGGAAATAGAAGCTTGTACTTGCTTGGTTTGGTATCACAGGTAGGTCTGTGGCTGTGCTGCAAGTCCCAAATGATCAGCTTTTCTTAATGCACATTTGCATTTCTGGTTCTAAGCTTTTGAATAGTCTTTAGTCTccactgtttattttttaacaaaggaCTGCTTTGGATATATCAAATGATGGATATATCTTTAATTTAACTAATATTGCAATACTATCTTTATAACTGCCTCCCACAGTTTCAGTATGATAGTATTAAAGTATGTATATGTCACTTAATATCAGCCCCTTTCTTTATGAAGAAATGTTGAATGGTTGGACTCTATTATTTTGTTGTGCCTCTCTGTGCCATCAACTAGCTGTGACGTCCTCATGATGATTGTACACAAAGGGGCCTGATATCCCTGAAGTAACACAGCACAACGAAGCCTGCATACGCACAGGGCGAAGGATGCTCTTGAATCTTGTGTAACGCTGGTAATCTTAACCTGTTAGTGAGCCAGCTGCAGTTCAGGGcaaattctgtttttgtgtaaatgcagcccatttcttttgttttggtctttagTTGTAGAAATATGATATTGACATGAAAATGCAGTCCGTTTTATTTTTCGAGTGTTCATTTACATCACAACAGAAAATCTTACTTGTAGTCTTGTGTAGTTTAGTTGTaacatatataatttttttttttatagctgaaTCACTTCAGGTTAAAAACCAGATCTTTCTGTTCTGTGTAAACGGAGCCTCCTCTAAGCTTCAGTGTGTTGCCATTGTACCAGTACGCAGTCCGCGTATTACAGTGTCAGTGGTGAGGCTGGACTTAGCAatagtaagtgtgtgtgtgtgtgtgtgtgtgtgtgagacaaagCTCTGCAAAGTATTTCTGATTTTCTGACATGTTTTGTAGATTAAACTAGATTTGCTGTGCTTCTTGCTttgtaaactgtttttttttttgctttttaagtATGTGGATTTTAGTCTCACCTGAAACATACTGTAGATTTTGCAACATTTTATATCACACTGACATTGCTATTGTTTTACTGTGAATAAGGTAATTCTAGAGCAATTTTAGCATGCCTACTTACAACTGTAATATATGGAACAAACTGTTTTTAGTAGTTAATATATTGCATTTGGACTGACAGAACACGACAAacattgattttatttattttttcatggtTACCTTCCATAATTCATacttttgtcttattttttgaaaaatatataaatttctTTTCTCTTATTTTGAGCAGAAGGAATTGTCTTTTAcattcctaaataaaatgtggaCTAAAGCGCAA

Function

GO: NA

KEGG:

id description
K25000 RAVER2; ribonucleoprotein PTB-binding 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128141 lncRNA upstream 9922 12995235 ~ 12995654 (+) True G95002
TU128136 lncRNA upstream 139325 12865912 ~ 12866251 (+) True G94997
TU128119 lncRNA upstream 139735 12865015 ~ 12865841 (+) False ror1
TU127958 lncRNA upstream 562496 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA upstream 563715 12353673 ~ 12441861 (+) False lrp8
TU128168 lncRNA downstream 7244 13107689 ~ 13112320 (+) True G95027
TU128185 lncRNA downstream 45860 13146305 ~ 13146795 (+) True G95040
TU128265 lncRNA downstream 235289 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA downstream 235289 13335734 ~ 13342098 (+) False LOC120565776
TU128278 lncRNA downstream 271999 13372444 ~ 13375668 (+) True LOC120564967
XM_039811947.1 mRNA upstream 10812 12896287 ~ 12994764 (+) True cachd1
XM_039811948.1 mRNA upstream 10812 12937290 ~ 12994764 (+) False cachd1
XM_039812265.1 mRNA upstream 139734 12742805 ~ 12865842 (+) True ror1
XM_039812266.1 mRNA upstream 139734 12742805 ~ 12865842 (+) False ror1
XM_039812267.1 mRNA upstream 147951 12742805 ~ 12857625 (+) False ror1
XM_039811774.1 mRNA downstream 49405 13149850 ~ 13158641 (+) False ak4
XM_039811773.1 mRNA downstream 49406 13149851 ~ 13158641 (+) True ak4
XM_039811402.1 mRNA downstream 63260 13163705 ~ 13204369 (+) True dnajc6
XM_039811401.1 mRNA downstream 63260 13163705 ~ 13204369 (+) False dnajc6
XM_039811400.1 mRNA downstream 63260 13163705 ~ 13204369 (+) False dnajc6
TU127781 other upstream 1561043 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1756929 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2057330 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 2064332 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2845769 10074206 ~ 10159807 (+) False LOC120565490
TU128204 other downstream 72580 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 278953 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1518913 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1709923 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1709923 14810368 ~ 14914033 (+) False dennd1b

Expression Profile