RNA id: XM_039811793.1


Basic Information

Item Value
RNA id XM_039811793.1
length 924
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120565776
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13335734 ~ 13342098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTTAGTCGTTTCACAGCTTCAGAGTCGCCAGGGTGTCCAACTCCATCAGGTTcattgttcagtgtgtgtggcAGAAGTAGTCCAACATCCGATGGAAGAACGACCCTTAAAAGACTGGAACAGTGGTCTCTTTGACTGCTTTGAAAACGCGAATACTTttTGCTATGGCTTCTGGTGCTGCCCTTGCCTTGCCTGTACAGTTTCAGGAAAATTTGGAGAGAACAGTTGTCTCCCATTATGTGACATGGCTGGCCCCGCCATAATGGCCATCTTTGGGATACCTATGTGTATGGCGCCTCCTGCAGGTCTGTCCTTAAGGGCTGCCATGCGAAACAGATATGCTATCAAGGGTTCTCTCTGTAGGGACATCGTAGTTTCCTGTTTCTGCGGGTGGTGCAACTGGTGTCAGATGGATCGTGAGTTAAAAAATCGAGAAAACACTCCCACTGTTGTCAATGTGCAGCATCAAAATGTTGTAAACGTGAATGTGCAGCAGCCGACTCCAATGATGATGGCTCCTATAAACCCTGCTCCTATGATGATGGCTCCTATAAACCCTGCTCCTATGATGATGGCTCCCATAAACCCTGCTCCTATGATGATAGCTCCTGCTGTGGGTCCTGAACAGCCTGCTCAAATGATGATGCCTCCTGTATACCAATTAGTGGAAACCAAAGAGTGAgagtatgatgatgatgactttCAGTTTCTTAACCCTCACGGGTCTAATCCAGTTTTTCCCATATTTGGTTTGCCTGGTCTCCTTGTGTAATAATGCTTGTATAACCCTGTGATGCACAATCAAGTTATAGACATATTCTTTTTCAGGACGACCTGGGCTATCAGGATATGTATGCTGCAGGGATGTCACATGAATGTATGCATTGTTATATGACTATAAAAgatgacagaaacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128185 lncRNA upstream 188975 13146305 ~ 13146795 (+) True G95040
TU128168 lncRNA upstream 223450 13107689 ~ 13112320 (+) True G95027
TU128143 lncRNA upstream 235432 13098787 ~ 13100338 (+) False raver2
TU128141 lncRNA upstream 340116 12995235 ~ 12995654 (+) True G95002
TU128136 lncRNA upstream 469519 12865912 ~ 12866251 (+) True G94997
TU128278 lncRNA downstream 30493 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA downstream 30522 13372473 ~ 13374348 (+) False LOC120564967
TU128288 lncRNA downstream 48872 13390823 ~ 13399617 (+) False LOC120564965
TU128289 lncRNA downstream 57879 13399830 ~ 13400932 (+) True G95114
TU128315 lncRNA downstream 145085 13487036 ~ 13487366 (+) True G95139
XM_039810377.1 mRNA upstream 672 13328617 ~ 13335098 (+) True LOC120565057
XM_039810378.1 mRNA upstream 672 13328617 ~ 13335098 (+) False LOC120565057
XM_039811998.1 mRNA upstream 15073 13317776 ~ 13320697 (+) True LOC120565891
XM_039811888.1 mRNA upstream 30536 13293866 ~ 13305234 (+) True ttc22
XM_039811887.1 mRNA upstream 30536 13300485 ~ 13305234 (+) False ttc22
XM_039812029.1 mRNA downstream 14421 13356372 ~ 13359125 (+) True LOC120565910
XM_039812047.1 mRNA downstream 25343 13367294 ~ 13369007 (+) True LOC120565922
XM_039810237.1 mRNA downstream 37447 13379398 ~ 13382747 (+) False LOC120564964
XM_039810238.1 mRNA downstream 48878 13390829 ~ 13399744 (+) True LOC120564965
XM_039810412.1 mRNA downstream 71410 13413361 ~ 13415999 (+) True insl5a
TU128204 other upstream 115398 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 235325 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1891237 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2087123 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2387524 10946976 ~ 10948246 (+) False si:ch211-162e15.3
XR_005640172.1 other downstream 37447 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1277407 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1468417 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1468417 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2978543 16320494 ~ 16341048 (+) False kdm4b

Expression Profile