RNA id: XR_005640173.1


Basic Information

Item Value
RNA id XR_005640173.1
length 341
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120564967
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13372444 ~ 13375668 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACTTTGATTCGTTTCACAGCTTCAGATTCGCCAGGGTGTCCAACTCCATCAGGTTCATTGTTCACTGTGTGTGGCTGAAGTAGTCCAACATCCAATGGCAGCACAAGACTGGAGCAGTGGTCTCTGTGACTGCTTTGAAAGCGCGAGTACTTGTTGCTATGGTTTCTGGTGCTGCCCTTGCCTTGCCTGCACAGTTTCAGAAAGATTTGGAGAGAACCGTTGTCTCCCATTATGTGACATATGCAGCCCTGCCATATTATCAGCCTTGGGGATACCTCTGTGTGCGGCGCCTCCTGCAATTTTCTACTTTTTATTAAAGTGGACAGattatgcttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128265 lncRNA upstream 30375 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA upstream 30375 13335734 ~ 13342098 (+) False LOC120565776
TU128185 lncRNA upstream 225678 13146305 ~ 13146795 (+) True G95040
TU128168 lncRNA upstream 260153 13107689 ~ 13112320 (+) True G95027
TU128143 lncRNA upstream 272135 13098787 ~ 13100338 (+) False raver2
TU128288 lncRNA downstream 16475 13390823 ~ 13399617 (+) False LOC120564965
TU128289 lncRNA downstream 25482 13399830 ~ 13400932 (+) True G95114
TU128315 lncRNA downstream 112688 13487036 ~ 13487366 (+) True G95139
TU128338 lncRNA downstream 135845 13510193 ~ 13514065 (+) True G95148
XR_005640289.1 lncRNA downstream 330019 13704367 ~ 13747072 (+) True LOC120565805
XM_039812047.1 mRNA upstream 3466 13367294 ~ 13369007 (+) True LOC120565922
XM_039812029.1 mRNA upstream 13348 13356372 ~ 13359125 (+) True LOC120565910
XM_039811793.1 mRNA upstream 30522 13335770 ~ 13341951 (+) True LOC120565776
XM_039810377.1 mRNA upstream 37375 13328617 ~ 13335098 (+) True LOC120565057
XM_039810237.1 mRNA downstream 5050 13379398 ~ 13382747 (+) False LOC120564964
XM_039810238.1 mRNA downstream 16481 13390829 ~ 13399744 (+) True LOC120564965
XM_039810412.1 mRNA downstream 39013 13413361 ~ 13415999 (+) True insl5a
XM_039811498.1 mRNA downstream 421746 13796094 ~ 13820008 (+) True swt1
XM_039811496.1 mRNA downstream 421865 13796213 ~ 13820008 (+) False swt1
TU128204 other upstream 152101 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 272028 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1927940 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2123826 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2424227 10946976 ~ 10948246 (+) False si:ch211-162e15.3
XR_005640172.1 other downstream 5050 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1245010 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1436020 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1436020 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2946146 16320494 ~ 16341048 (+) False kdm4b