RNA id: TU128368


Basic Information

Item Value
RNA id TU128368
length 1756
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G95173
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13822853 ~ 13825269 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTATccgctcatacacacacacatacagaacatCACGAAACACGATTACGTCACTAAGCCTGTTAGTTTGGAAAAGGTGAAGCACTGTGAAACTCCCcaactcccttcctcctcctcctcgtcttccCCCTCTTTAGTCGGAGAGGGGAGACAGGGCCTTGGTGCAGTCGTCCCACTCGTCTGTCTCGAGGTTGTACACCTCCATCGTGTTGAGGAACTCGTTTCCATCGAAGCCGCCCACAGCGTAGATGGTTTCTCCCAGGATGGCCACGCCCGCATTGCTGCGGGAAGAGGTCATGCTACCCAGCATCCTCCACTCGTTGCGGGCGGGGTCGTACACCTCCACACAGCGAAGCGCGTGGGAGCCATCGAAGCCGCCAACAACAAACAGTTTGCCTGGACAGAGTGAGAGACCTCATCAGCAGAAGGACAACAGAATCGCTGAAATTCATAACAGTTTGCTTCTTGTCAACATCTTGTTTCCCACACAACTTCATGTTcttgacacacatacacacacacatacacacagctgatTGCACCGTTCACACCCCCGTTTGTGGTTGTGGGCTTACCTGCATGGACAGCAACGGCGGCCCCCCTGCGAGCCACATTCATGGGGGCTATCAGGGTCCAGGTGTTGTTCTCAGGGTTGTAGCGTTCCACAGTGTTCAGGCAGTTCCACGACTCCGCCCCTCCAATCACGTACATGAAGCCCTCCAACTCACACACTGCTGCCTGGTGCCTCCCTGAAATAGAATTTGCTTTGATGAATACAACTCTCCTAGTTTCCCCCCCAGGCTGCAAATATCACAAGAGCTGTTCTGAGGAATAGTTATCCTACTTTCGGTCTCGTTTTTAAGCATAATGTACTCTTTGCTCCAACAATCCAATTTCCCAGAGGGAATAattaaagcttctttttttttttatttatatatttaaatctatttatatatttaaatctatctatctatctatctatctatctatcgtgGTTAGCTCGCTGAAAAAGATATTATTCAGCTTTATGCCTTTTAGACCATGTTGTAACTGTCAAAGGGAAGGCTCTGAGTGTATGTGGGACTGTGTGGACACGTACTGATGTTAAGGGAGGCACAGTTGGACCAGGTTTTGGTCACAGGGTCAAAAGCGTCACAGTTCTTCAGGCCCTTCTGCCCGCAGGGGTCCGACCCTCCCACAACAAAGAGTTTGTTGTTCAATGAGCAGACCTGCATTGCAGCGGTTGGTCCTCAGCTCTGGCACTTGAGCCCACTCGTCAGCATGTGGATCGTACGTCTCCCCGCAGCTCAGCTCGTCAGAATGTCCATTTGATCCTCCAATCACGTACAGCTGACCCATGAGCACAGCCATCTGAAATCGAGCCCTTGGAGTCCGCATGGGAGCGATGAAGGTCCAGCGGTCCTCTTTGGGGTCATAACACTCCACAGTCCTCAGACACTCTTCTCTGTTGTACCCTCCTGCAGAAACATCAAGGTTACAGTGGAGCTCTGtggtttttcctttttacacAACCTCCATTTTAAACATTAAGTATTTAAGACCCTAATGTCCAGATAAGTTTGGCGTAGACATTGATGGTACTTGGGCTACACAAAGAAACTCAGCGTTCGAAGGTAATTTTTGTCTCTTGAGCCAAGACAGAAGCATGTAGCGTCCCGTGTATCCCAAcctccttacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640289.1 lncRNA upstream 75781 13704367 ~ 13747072 (+) True LOC120565805
TU128338 lncRNA upstream 308788 13510193 ~ 13514065 (+) True G95148
TU128315 lncRNA upstream 335487 13487036 ~ 13487366 (+) True G95139
TU128289 lncRNA upstream 421921 13399830 ~ 13400932 (+) True G95114
TU128288 lncRNA upstream 423236 13390823 ~ 13399617 (+) False LOC120564965
TU128376 lncRNA downstream 188 13825457 ~ 13828481 (+) True G95177
TU128378 lncRNA downstream 5581 13830850 ~ 13835258 (+) True G95179
TU128472 lncRNA downstream 127880 13953149 ~ 13954884 (+) True G95236
TU128475 lncRNA downstream 143662 13968931 ~ 13971139 (+) True G95239
TU128529 lncRNA downstream 319736 14145005 ~ 14145318 (+) True G95287
XM_039811498.1 mRNA upstream 2845 13796094 ~ 13820008 (+) True swt1
XM_039811496.1 mRNA upstream 2845 13796213 ~ 13820008 (+) False swt1
XM_039810412.1 mRNA upstream 406854 13413361 ~ 13415999 (+) True insl5a
XM_039810238.1 mRNA upstream 423109 13390829 ~ 13399744 (+) True LOC120564965
XM_039810237.1 mRNA upstream 440106 13379398 ~ 13382747 (+) False LOC120564964
XM_039811693.1 mRNA downstream 31765 13857034 ~ 13947979 (+) True hmcn1
XM_039811906.1 mRNA downstream 170226 13995495 ~ 13999954 (+) True ptgs2b
XM_039811908.1 mRNA downstream 199486 14024755 ~ 14028859 (+) True pdcb
XM_039811907.1 mRNA downstream 199487 14024756 ~ 14028859 (+) False pdcb
XM_039810521.1 mRNA downstream 208988 14034257 ~ 14065550 (+) True tprb
XR_005640172.1 other upstream 440109 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 602481 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 722408 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2378320 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2574206 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 794089 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 985099 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 985099 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2495225 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 4030368 17855637 ~ 17859152 (+) False nppc

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU537766 True 2402 lncRNA 0.46 2 CI01000325 9796411 ~ 9799055 (-)