RNA id: TU128558


Basic Information

Item Value
RNA id TU128558
length 3754
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120565959
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14258285 ~ 14263886 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTCTGCTCCAGATGGTAGCCTACAACAGGTGCATCGAAACGCTCCCAATCCTCTTGGACGAGATTGTGACGTCACTCATAAGCGTGCTGAACGGTTTAACATCTCTGGGACAACATGTCACTGAAGGAATGTCTGGAATGgactcacttttttttaacttttgttcACTTACGAGAATCAGAGTCTTTGAGTATTTTATCCCACATTTTTACGAATTTATTATTTACAGATCATAAACCGACAAAAAAGGACATGGAACGGACTGATTCCAGCGATAGGTGTTACAATTAGCTGCTGGATTCAGGTCTTCTCTAGAAAGGAGGTTCAACCGGTCCACCTGCCTCCGCTGCCTCAGGCCAACGCCAGCTATGCACTTTTCAAAATGAAAGCATGAACGTTCTGCGTGGGCGAAAGAAAAGCCACGCACCTTCTTTGACGAGGTCGAACACTTCGCTGACATCAAAGCTGATCTCGTCCGTGTCCTGGCCGACGTACTGATATATCGCCCGGCAGCGGGGCCCCTGGGGCCGAGGCTGTGGTTTAGGAGCAGGAGGAGGTCGCTGACTAATGCTCCTTTTCCTCTGCTTCctgtgacaaagagagagaaatgtgacaAAGGGATAAAAGGAGCTGATGAGGAGTCAAAGACTCGTAAAGCTTCTTTTAGGCTAAATGGTCAGACAGGGAAAGTCAAACCACAGAGAGCCCCTTTAGGTTTGTATATCTTCATTTGTGAAAGCTTTTCATGCTTTATCTTCATTGTTTCTTTATAAACCGTATGTACAGCATATAGAGAGCTGAGTCATACCAGAACTTttggtttctgtttcagaaGTTCACATCAACATGTTTAATAACAGATTACTAAACATCCAGCCTCAGAATATTGCGTGGATTGTGGGGCTGCTTAAAAATTCATGTGAGCTGTAGTTTTTTGTAAACTGACAAATGAATTGTTATTTAACTTATAATCACAAAAATGCTAATAATACAGAAGCAATTGTTGTAGTAAAATTTGAATGGAAAGTTAATCCCAGCAacatatttcacttttttcccccagaaaGATAGCTGAAAGGAACCCTCAATGAGAGATTGCATTGAGTTAAAGCATCAGTACGTTTTAAACAAAGTGCTTGTCAGAATGTGTCTGACAATTTCTGTAACTTTCAGAAACCAACAATGCAACATGTTTGGCCACTTCATGCAGTGATTGGCCATGTGTGTGGAGGTGTGAAAATAGGCCGGATTTGAACTCAAGCTCTATTTTTTCATTCTTCACACTTCTGTTACCTATCGTGTGAAAACAAGTGCAACTCCACATTTAAGggatttttgtatcttattttgcTATGACGGAAGTTTTTATACCCTATTTATTAACACTAAACAAACTTGTTTGTTTCAAGGCCTTTCCAGAAACTAGGGGAACAGCAGCTCACCTACAGTTGGCATCAGGACTTTCTATAAACAGGTTTATCTCTCTCACACTATTCAACATGCATTCATTTATTTGGGTGTGGAGCCTCACCCTGATGTGTCTTAACAACTCGAAAAGCTTGTGTGCACTCATTTTTTTGTGACTAATCTGCTCCACCCACATATGCCATAATCATCCcttccttcccttttttttcacatCTCAAGAGGGGATCTTTCGTACCCTGACATGCCCTGGTCAGGCACATTGAGGAAGTCCAAGTTCCCCTGGTTGTGCTGGTTGTGGGCTGGGACTCGGGGGGCCCTCTGGGAACCcatttttggtggagctgtgCTGGGTGGCCGGCCCTGTTTGTGTGGGGACGAATATGTGATATCTGATGGTTGGTTGTGAGGGACTCTAGAAACCTTGGCTGCTCCATTCTGGTGCGCtggggagagagaaaatggaACGAAAGTAAAGATAAGACCTCCAGATTTCAGTACCCAGCTGCTTCTACTCAGATATTATCTCAAATTGAAGTTATATAGTGGGTTTGAAATGGTAATGGTGGATTAAGTGTTCTGGCAATCTTTTAAGTAAGTAGCAATACGTCCAGTAAAAAGTACTATCAAAGCAGGCAGAATGACTCCTGTCAGTGTTATATTATACTGTATTATTGGATTCTTACTGCCTGTGATGTGTATACAGCAATTTTGTTGAAACTGATTAAAGTAAAGCAAATTTCTACTTCTTTATATCCTGTTGAGTAGGTGAATCTACAACAATATGTCATATTTTACAAGATGatcatttgttttgtctgtaaaacctTAATTTTCAAAGTAAGTTGTAACTATAGCGCTCACATAAACGTAGtggagtaaaacgtacaatatttGAATACATAAGTTGTAACTTTACCTCTGCTGGCAACATTAATTCTTCCTCCACCACGAGACTGTTGAGCACTCTTCTTGGTTGGTTCTGGGGAAAAAATGCTTAGTTACAAATAACATTTGCATAAACAAGAATCAATGTATAGTTAGTTTCATCTTTGTAATCTTTTCTTTAATTGGCTATGCTTCTCCTTATTTCAAGGCTGTACTGTGTCATTATTTCTTTGAACTTACTGGAGGACTTGGGTAGACCATCCCCTACTGTGACGGTGAGGGTCTTCCCTCCGGGTTTGAGCTGGGCCAGGTCCCCTTGACCCCTCTGAAACACCACCACCCTGGTGCCACCTCCACCCCAGCCCTCCTTCTTCACTCTGAACTCTAGTCTGAGTAGGAAGAAAGCGTGTAAGtgatttgtgtttctgtgtaaatatatgctTTCTGAGTGTGTAGGTTCCTCTACCTGTCAGCGAAGGAGATTGTCAGTTTTCTCTTGGTCACGTCCTCGTAGCGTTTCAAGAGCAGACTGAGGAACTCTGTCTTAAAGTTGGACTCCAGCAGACTGTCGTACTGGACCTCATGTAAGATGAAGAAATCATCCTGTCTCGtactgaagagaaaaaaaagcccaTTAAGAGCTTCTAAAGCAAGATTCAAAGAAACATAggctttttaaaatttaaaatgtctttttatgGCAGTAATAGCTGAAGTTAAAGATGTTAAAGCTGTGTCAAGCTGTACTGAAAGTAATTACAATGGCGATACTGAAAAGAGTTTAGGTTTCAAAGGTTTCAAAGTTTAAGGGCTTAATGGCAGTGGAAGACGTGTTTAGATTGTATGTTAAAGTTATTTAAATAGTTAATTAAATTACGTGAGAAGTTTAGAGGGGAAATGTCTCCTTGGTTGGACTGCTATCAACTCATAAACATCTGAAACATGACAGCCTGGAGCCTCAACaagacactgttttttttaagggaTTAAGGGCTGAAAAGGTTGGGAAcaagttttaattttttaatacgtTTTTATGTAAACATTTCGGTAACTtttaactactactactactacactttatttatagtggagtagaagcacaaagtaaaaaaatgaaaaaactctAATCAAGTGTAAGTACctcaaaaatgtacttaagtacagtactcgAGTGAATGTACTTAACTAAATGTAAATCGAAAAGGACATTGTTCGAGTTAATCATGTATGTAATTCATGTTTGTGGCCCTGAGAAGGCCACGTTCTtagcagagaaataaataaaaagaaaatcaaattcTGTGAATTCTCAGTTCAGCAGTATATGTTCATTTGCTATATTTACTCTTGCAGCATTAGTGACTTCTCAGACCACTGTCTGTTATCGGCCGACAAAGCAGCATCCTACTTCTCGTATTTTCCACCACAGCTTcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128541 lncRNA upstream 35691 14220571 ~ 14222594 (+) True G95299
TU128539 lncRNA upstream 49723 14206339 ~ 14208562 (+) True G95297
TU128529 lncRNA upstream 112967 14145005 ~ 14145318 (+) True G95287
TU128475 lncRNA upstream 287146 13968931 ~ 13971139 (+) True G95239
TU128472 lncRNA upstream 303401 13953149 ~ 13954884 (+) True G95236
TU128645 lncRNA downstream 105036 14368922 ~ 14369226 (+) True G95372
TU128745 lncRNA downstream 282650 14546536 ~ 14639046 (+) True G95447
TU128779 lncRNA downstream 425496 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA downstream 431796 14695682 ~ 14698562 (+) False LOC120565380
TU128781 lncRNA downstream 435664 14699550 ~ 14700145 (+) False LOC120565380
XM_039810666.1 mRNA upstream 54921 14173719 ~ 14203364 (+) True acsbg2
XM_039810665.1 mRNA upstream 54921 14179012 ~ 14203364 (+) False acsbg2
XM_039810667.1 mRNA upstream 54921 14179012 ~ 14203364 (+) False acsbg2
XM_039811643.1 mRNA upstream 113344 14081556 ~ 14144941 (+) True fcho1
XM_039810522.1 mRNA upstream 192735 14034267 ~ 14065550 (+) False tprb
XM_039810217.1 mRNA downstream 81695 14345581 ~ 14361643 (+) True LOC120564948
XM_039810216.1 mRNA downstream 81695 14345581 ~ 14361643 (+) False LOC120564948
XM_039810218.1 mRNA downstream 86512 14350398 ~ 14361643 (+) False LOC120564948
XM_039811954.1 mRNA downstream 98909 14362795 ~ 14368554 (+) True mob3a
XM_039811953.1 mRNA downstream 98909 14362795 ~ 14368554 (+) False mob3a
XR_005640172.1 other upstream 875541 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1037913 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1157840 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2813752 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 3009638 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 355472 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 546482 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 546482 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2056608 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3591751 17855637 ~ 17859152 (+) False nppc

Expression Profile