RNA id: TU128764


Basic Information

Item Value
RNA id TU128764
length 1938
RNA type TUCP
GC content 0.42
exon number 2
gene id G95460
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14619358 ~ 14621413 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTATTTCAGCAAAGCTAAAAAGAACATATCTGATGATCTAACACACATGAAGTGGGGCAAGGCTTAGGGTGTTGCAGAATAGTCTATCCGAGCAGAAGCATACTGTGGTTTTACGCTTAAGTAACAGACAGTATTTACACTGTAGGTAGGAAGATGACTGACCTCACTCTCAAACCACATTGCAGCATCGACCGAAAAAAGGACAGGAAGGACAGGAGGCTTCGATGTGACTCTGCTGGGCAGTGATAtttaatagttaaaaaaaaaagcttaattcAGTGTTGTACAGTATATGACACCAATACAAACTGAAGCTCAGGAACAAGGCAGGATGGCGACTGCACTTTGCTGTGCATGCTATGGCTGAAAATAAAACGTCCCTTTAAACCCCGTGTTCATCTAAGCCAGCTCTCGGACAAAAACCCTCTAGGGCTGTCACAAAGACAGGGCGAACAGTACAGCTATCCCAAGCCCTGAGCTGGGGGAGCTAAAGGGTCCAAACCATGATGACAGATTGTAAGGCCTCTAGGCTAATACCTTCCACAGTCACACAAGATAACACCACAGCCCCAACACCCCTTAAGTTTTATTACTGGTCCAGAAGTAGAATACCCAGCCGTGAAAACATCAACATGCAAGGCAAGGTAACATCCACCGAGCACTGCGGCTCTTTCCTTCACTTTCACAAAGGTCCTTTTTCTATCGTATCCATGGGCAtgaattattttacaaaaaggcagACACAAACATTGGATAAACTAATTCTGGTACTGGCAATTATTTACACACATCATaacattcttttcttttccttttccagACATTCCTTTACATATTTTTCTTCGCTATCTGTGCTGTTACATTGTTGTGCAACTAAAAATTTACAATTTACAACTATGTATGCAAGTTCAACtttttccttatttttcttttatgtcCTTTGATGAAAGAGCAGCGAAAACTCACAGAAAATCCCACTCTCACTAGCCTCGTTTAGCCAGAAGGTGGTGCTAGATGTAAAAAATATTTCTCAGAAACACCACCACGACATTTATCCTACAAGAACAAGTCCCAGAATATAATGAAGGTATGCATATTCACCATAAACACACATCTACGGGGGATTCTGGAAGAGTTGCTTCTACTTTGTGCGGTTCTTCACAGTGCAGTCTTAGTTCAGTGTGGAGAAATGTCGCAATGCCCCCATGTGGTTGCAGAGTGGGCAGTGAAACTGAGAGGGTGGGCACTGTGGCTGGCAGGAAGCTCATTGCCATACATAAACAATAACAgttataataaaattaaaacagtAACAAAAAGTTATCTTTGCACAAATCAGGACAGACTCTCCAAGTGACAGGCTACACAAGTCATGTACCAGTTATGAGACTGATTTCAAGGGTAGTGTCTGACTTTATCTGTCAAGTCCCTCTCTAAACTTACATCAACTCTGACACTTTCTCAACTATTCATTCACCTCAAGCATACAGTACAACACACTCACAGCTTAGCATGCATACAATCATAAACACATGTACTATTACACAGAGAGTACCCAGCATAAACCAACAGTGGTTTTCAAATCTTTTCTGGTTACATCATTTTAACGCACACAATTTTTACACAATAGATGGCTGCTTTGTTGACAGGTATTTCCCTACTTCCACATATTTCATCTATTGGTGATGCCAGGAAAGGAATCCTGCCATAGTGCAGAATGGCCAGAAGTATTTATTCAGGTGGGATTatcctttgtttttgttagtttATACTGGCTATACTgtgcacacacagtcacacacagtcacacacacacacacacacacacacaaacacacacttatgAGTCCTCATTCATCTCTTGGCTATCTGTCCTTGCAATCTTCCTTGGGGGTGCCGGACTGTCCCCCTCACCTTGTTCCTGTTCCCTTTTCT

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128645 lncRNA upstream 250132 14368922 ~ 14369226 (+) True G95372
TU128557 lncRNA upstream 355472 14258285 ~ 14263886 (+) False LOC120565959
TU128558 lncRNA upstream 355472 14258285 ~ 14263886 (+) True LOC120565959
XR_005640311.1 lncRNA upstream 357466 14258356 ~ 14261892 (+) False LOC120565959
XR_005640310.1 lncRNA upstream 357598 14258357 ~ 14261760 (+) False LOC120565959
TU128779 lncRNA downstream 67969 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA downstream 74269 14695682 ~ 14698562 (+) False LOC120565380
TU128781 lncRNA downstream 78137 14699550 ~ 14700145 (+) False LOC120565380
XR_005640293.1 lncRNA downstream 165655 14787068 ~ 14791606 (+) True LOC120565827
TU128805 lncRNA downstream 257669 14879082 ~ 14879287 (+) True G95492
XM_039810569.1 mRNA upstream 155 14579027 ~ 14619203 (+) True ano8b
XM_039810568.1 mRNA upstream 155 14591528 ~ 14619203 (+) False ano8b
XM_039810570.1 mRNA upstream 155 14591528 ~ 14619203 (+) False ano8b
XM_039812472.1 mRNA upstream 64438 14548589 ~ 14554920 (+) True plvapb
XM_039812080.1 mRNA upstream 74830 14537576 ~ 14544528 (+) True babam1
XM_039810178.1 mRNA downstream 2866 14624279 ~ 14637054 (+) True abhd8b
XM_039811168.1 mRNA downstream 71091 14692504 ~ 14704353 (+) True LOC120565380
XM_039812299.1 mRNA downstream 188956 14810369 ~ 14912885 (+) False dennd1b
XM_039812295.1 mRNA downstream 188957 14810370 ~ 14923845 (+) True dennd1b
XM_039812296.1 mRNA downstream 188957 14810370 ~ 14919627 (+) False dennd1b
XR_005640172.1 other upstream 1236614 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1398986 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1518913 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 3174825 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 3370711 11248575 ~ 11248647 (+) True trnam-cau_8
XR_005640328.1 other downstream 188955 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 188955 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1699081 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3234224 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 3245135 17866548 ~ 17866681 (+) True LOC120566215

Expression Profile