RNA id: XM_039811168.1


Basic Information

Item Value
RNA id XM_039811168.1
length 1894
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC120565380
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14689382 ~ 14704353 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGGTGTGCGGCTGTACACACCCTAACTCTTCGAAATGGCAGGTCTCTGTGGTCTCAAGATCCTGCTGGTCTGTGCTGGGATCATCATTTTGGCCAACTGCCAAGGTGGAGATCCACCTGCAAAACCAGCAGATCAAACACCAGCTGCAAATACAACAACCACTTCTGCTCCTCCTGCAAGCACCTCACCCTCACCCTCACCTTCACCCTCAACCTTACCCACACCCTCAACCTCAACCACACCAAGCAAGCCATTAGACTCTCAGGCAAACACCACTCAATCCCAGTCTTTACCTCCAACCACCATGTCCAACACCACAGTGACTGCCACCAAAGCCACCACACCAGCCCCTCCACAGTGTTCTTACACTGTCAACGCCATCACGTTTGGCTTCCAAATTGACATGAAGAACTCTACCACTGGAAACTACACAATAAAGATTAAAGAAAAGGGACGACCAAAGACTGAAGAAATGTTCACCGTTCATTTCTTCATTCAAAACTCACCACATGAAATCAAAGACCTGAAGCCCTGTACTGAATATGAGCATAATGTGGCATTTATTGATAGTGCTGGCAAAGAAACATCCTGTAACAGCACTGAAAAGAAAACTTGGACAAATGGAATAAGTGATGGTGACATTACAGATGAAAGCTGCATACCCAGATACGTTTGTTACCATAGTGGTTGGGACATCAGCTCTTCTCTAATTTCATCAAATAATATTACAGCTGAGAAATGCACAAATGAAAGTAAAGTGTTTTGTATCAAACCTGGTTACGATGACATTTGCACAAATTTGACTACAACCATCACTTCAGAAACGTGTTCCGATTATTACCTCACCAGAAGCATCACTCTTGATTTCTTAGAGCCTAGTGAAATAAAACAGCCAAATCCAAATCATCTTCCTgcaataaaaccaaaattacCTGTAAACTGCAGCCATCTCACTATTGATTACACCTGTCAGGAAAATGGAAAACCCAATGACACCAAGGAACTGTCTGAGCTGGAGCCCTTCACAGACTACAGCTGTACTGGTCAGATCAAGGAACACAACGTCACCATTAAAAAATCTTTCAAGTTCAAGGTTGACTGTGATCTTAAATTAAACATAGAGAATAAAACAACCGATACCTCCATTTATCTGAAATGGAGCACGATCAGTATGAATTGTCAAGATGTCCTTCCTAATCTAAAGAAGCTTTCTTACAACTGCAGTTGTACTCCAACTGCCTCAAAtcagaaacacagaaatacaACTAAAAATCTACCATCAGAAGGAACATGTAACATTACTGGACTGGAACCATTCAAAGAATATACCTGTGAAGTCCAACCCATATACAACAACAAGGAAGTTTCCAAACCTCAGACAGTTAGACAGGAGACTGCGATTGGAAcaccaaagaaaataaatacactgaCGGTGAAAGTTCCAGAGAATAACGTGATAACAGTAGCCTGTGATTATAGAGAAGTCAAGTTTAACGGACCTCCGGGACCCATCAATGCACATCTTCTTTATAATGGTATCACTCAGGAGAAGCTGACAAACAATAAATGCGAATTTGTATTCGAAGATCTAAGCTACTCAACGGAATACGAAGTAAAGgtGACTGCTTTCAACGGCCGTTTTCACAGCGACCCCAAGACAGAATCTGTTACCACTCGCTACAATGACAAAGCGGTCATTGATTTTCTggtcttcatcatcatcatcattgctTTTGTGGCCTTGGTTCTGGCAGCCTACAAGATCTACCATTACAGAAAGTCCAAAAAGGATGTGAGAGGGGATGTGATGCTTGAACCAACAGAAATTTATGTTAATGTACCTCGATATAAATACCGTCATAAGGACACACTCTGATGAAGAAAGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128745 lncRNA upstream 53458 14546536 ~ 14639046 (+) True G95447
TU128645 lncRNA upstream 323278 14368922 ~ 14369226 (+) True G95372
TU128557 lncRNA upstream 428618 14258285 ~ 14263886 (+) False LOC120565959
XR_005640293.1 lncRNA downstream 82715 14787068 ~ 14791606 (+) True LOC120565827
TU128805 lncRNA downstream 174729 14879082 ~ 14879287 (+) True G95492
TU128802 lncRNA downstream 218628 14922981 ~ 14923836 (+) False dennd1b
TU128807 lncRNA downstream 219599 14923952 ~ 14925603 (+) True G95493
TU128809 lncRNA downstream 220108 14924461 ~ 14925603 (+) False G95493
XM_039810178.1 mRNA upstream 55450 14624279 ~ 14637054 (+) True abhd8b
XM_039810569.1 mRNA upstream 73301 14579027 ~ 14619203 (+) True ano8b
XM_039810568.1 mRNA upstream 73301 14591528 ~ 14619203 (+) False ano8b
XM_039810570.1 mRNA upstream 73301 14591528 ~ 14619203 (+) False ano8b
XM_039812472.1 mRNA upstream 137584 14548589 ~ 14554920 (+) True plvapb
XM_039812299.1 mRNA downstream 106016 14810369 ~ 14912885 (+) False dennd1b
XM_039812295.1 mRNA downstream 106017 14810370 ~ 14923845 (+) True dennd1b
XM_039812296.1 mRNA downstream 106017 14810370 ~ 14919627 (+) False dennd1b
XM_039812297.1 mRNA downstream 106017 14810370 ~ 14919627 (+) False dennd1b
XM_039812298.1 mRNA downstream 106018 14810371 ~ 14919627 (+) False dennd1b
TU128764 other upstream 71091 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1309760 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1472132 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1592059 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 3247971 11429031 ~ 11444533 (+) False LOC120565923
XR_005640328.1 other downstream 106015 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 106015 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1616141 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3151284 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 3162195 17866548 ~ 17866681 (+) True LOC120566215

Expression Profile