RNA id: XR_005640329.1


Basic Information

Item Value
RNA id XR_005640329.1
length 2391
RNA type transcript
GC content 0.51
exon number 24
gene id dennd1b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14810368 ~ 14923845 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACGTCACCAAATCTTTGACAGCACTTCCTGGAGTGGTGTTTGTTGTGGGAAATAAACGCCGTGGTGCTGAACTGGGGGGGTTCAGGCTACATTAAACGGCAGAAGGACGGCACAAACTACTACACTAACCCACCTCCAAGCATGCGGTCGCGGCAGCTTTCGACCGGTATCAGATAAGGCAGAAGAAGTGACGGTTTAGACTGAGGAAGGACGAGGTGGACATATTCTCGGACAGCCAAGCAGAGCCAGAGCAGAGCCGCCGACAGCACGGAGTTGTCGCGATGTGGTAGCTAAACCATGGACTGCAGAATAAAGGAGAATCCAGAAAGAACTTTTGATCTGGTTGTACAGGTGGCATGTCCAACATCTGAAAATGAGGATCCAACCGTGCTGTGGAGCTTCCCCCAGGACCACACCGACCAGATATCCCTACGGTATAGGGCCCAGTCATGGAGGGAAGGAAGTGGAAAAGAGAGCTACAGATGTGAAGGAGAGTTATCAGTAATACAGGAGGTCCTTCAGACGATACCAAAGTTCTGCTTTCCCTTTGACGTGGCAAGAGTTTCCCAGAATCAGGTGGGGCAGAATTTCACCTTTGTGCTGACGGACATCGACGGCAAACAGAGGTTTGGTTTCTGTCGACTCACTCAAGGCTGCCGGGTCTGCATATGTCTGCTCAGCTATCTACCATGGTTTGAAATCTATTACAAGTTGCTGAATACGCTGGCAGACTACCTAACAAAACAACAGGAAAATGACTTGAATGACATGCTGAATTCTCTCTATGATATGCCAGTGCCAAAGCCCTTCACGCCAGTCAACCTGAGTGTGAATGAGCAGTTGTATATTGCCACTGGGCAAGTACTGAGAGATTGGAGGAGCAAGGAGCCGCACTCCTACTTCATCGCCCCGGATATCAATGGACTGCCAACTATCCCTGAGAGCAGGAACCTGACAGAGTACTTTGTGGCTGTGGACGTCAACAACATGCTCCAGCTCTACGCCAGTATGCTGCATGAACGGCGCATCATCATTACCTCAAGCAAGCTTAGCACTtTAACTGCATGTGTCCACGGTGCAGCTGCTCTGCTCTTTCCTATGTACTGGCAGCACATCTTCATCCCTGTTCTGCCCTCGCATCTTCTGGACTACTGTTGTGCCCCCATGCCATACTTTGTGGGAGTTCATCTTAGTCTGCTGGAGAGAGTACGCAGTCGATCACTGGAGGATGTGGTCATTCTGAATGTGGACACCAACACCCTGGAGAGTCCCTTTGATGACCTGCACAACCTGCCCAGTGACgtgGTGTCCTCTCTGAAAAGCAAGCTGAAGAAGCAGTCAACAGCAACAGGATGTGGTGTGGCGAGGGCCTTCCTGAGAGTGCAGGCCGCTCTGTTTGGATCCTATCGAGATGCCCTCAGATATAAACCTGGGGAGCCAATCACTTTCTGCGAGGAGAGCTTTGTGAACCATCGATCGAGCACCATGAGGAACTTCCTGTCCATGGCCGTCAACCTGCAGCTCTTCAAACAGTTCATCGACGGACGGCTGGCCAAATTGAACGCAGGCCGCGGCTTCTCCGACGTGTTTGAAGAAGAGATCACAGAGGGGGGCTTCTGTGGAAGTAATTCAAGGTCTTACCAGCAATGGATGCATACTGTGAAGAGAGGAGGAGCACTCATCAACACAGCTGTGACTAAAGCCAAGAGTCATGCCAAAAGGGGCATCCGGGACATTAAGGGCAGACTTAAAGCAAGGgaagaagaagaagaggggatGATGGTCTGTGCCGGGTCTCCCACCAGCACCAAGAGCCTGTCTCCACGGAGACTGCAGAAATTGAGACGGAGACCAACTGGCCTCCTCGCTGAAACCAAAGTGCCATCTCCTGGCACCTTCAAAGTACTGCACTGCACCCATTCACAGAAAGACACCTGcgaAAGGGAAGTGGGCTTTCAGCAACAGCCAGTTGGACAGACGAGCAGTGGATCTTACCTcaaacacagttttttttttttttttgagtgagCAGCTCTTAAACAGACTTGGCCGTACTTCTGCAAAGGCTCTGCCTCTCCCCAagTCTCACTTGTGGTGACGTGGTGGAGAGGAAGGGAAGCGAGAGCCAGACAAACTGTGACATCTGTCGCTGACAGCAGAGTGATGGAGGGAGAAAATAGGAGACAGGAAGGCATGGAGAGGAGAatcactttttcattttcaccTTTCAGCTTCCCATTAGACGACAGCGAGAAGCTAATGAAGGAGCAGTATGATAATCTGTTGTTCTGCTATTTCATGCTTTTCACTGTCCTGTCAGGCCTGGGGAGGTATGGAACGGTGGCAGAGCTGTCACAGCTTTAACACGGGACCTGTTTGCGAATATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640293.1 lncRNA upstream 18762 14787068 ~ 14791606 (+) True LOC120565827
TU128781 lncRNA upstream 110223 14699550 ~ 14700145 (+) False LOC120565380
TU128779 lncRNA upstream 111806 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA upstream 111806 14695682 ~ 14698562 (+) False LOC120565380
TU128745 lncRNA upstream 171322 14546536 ~ 14639046 (+) True G95447
TU128802 lncRNA downstream 8948 14922981 ~ 14923836 (+) False dennd1b
TU128807 lncRNA downstream 9919 14923952 ~ 14925603 (+) True G95493
TU128809 lncRNA downstream 10428 14924461 ~ 14925603 (+) False G95493
TU128812 lncRNA downstream 16479 14930512 ~ 14932081 (+) True G95496
TU128813 lncRNA downstream 17036 14931069 ~ 14932081 (+) False G95496
XM_039811168.1 mRNA upstream 106015 14692504 ~ 14704353 (+) True LOC120565380
XM_039810178.1 mRNA upstream 173314 14624279 ~ 14637054 (+) True abhd8b
XM_039810569.1 mRNA upstream 191165 14579027 ~ 14619203 (+) True ano8b
XM_039812289.1 mRNA downstream 35135 14949168 ~ 14961237 (+) True axdnd1
XM_039812290.1 mRNA downstream 35139 14949172 ~ 14961237 (+) False axdnd1
XM_039812291.1 mRNA downstream 35370 14949403 ~ 14961237 (+) False axdnd1
XM_039812294.1 mRNA downstream 52233 14966266 ~ 14984677 (+) True tdrd5
XM_039812293.1 mRNA downstream 52509 14966542 ~ 14984677 (+) False tdrd5
TU128764 other upstream 188955 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1427624 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1589996 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1709923 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 3365835 11429031 ~ 11444533 (+) False LOC120565923
XR_005640269.1 other downstream 1406461 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2941604 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2952515 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2954633 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2957677 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile