RNA id: TU129093


Basic Information

Item Value
RNA id TU129093
length 3225
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G95710
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15474594 ~ 15478157 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATATCAGTTCATTTTGTGATCTTAAGTTCATTAGAAGTAGCAGGTAAGAGTATCCATCTCACCAACAAAAGGTACAAAATATTGTAAATCTTCAAAAACAAGAATCAACTAATTGTTAGtaacttttttattgttttaccaCAAAGTACAGATAAAAACATCCACAGCATATTCTCTCACCTTCATGGCCCAAACTGAGGAGGATGTGAAGAGGCAGTACAAGACCATTTAAAGTATGTTTCTTCGTGCTAGTAGAAGATCTAAAGTCGGCAACTTCTACCAAGCTTGATGGCATTTTTTTGTGTAGATACTGTAATGTGTATTGCTTATGTAACAGAGTAACACATTCATTCACAAGCAAGCCTAGTAATGAATGCAGATACAGTACAAcatggctgttttttttgtttgttttttaggtttttactgtctttttttctttgttgcaAGCATTAGTCGATACAACACAATCCACACATATGACTCAAAGAACCGTATTTACAGATCTGGTTTATATAGAGAGGAAGACGCATTAGAAAGGAGAACAGTTGAAAAGTTTGGATTTTACCGGAAAAGAAACAGTCACAACCAGTAAGAAGTTAAATGTATGCAGGATCAAAATTGTCTCCCAGGTTTGTCGTAATCATCACTCCCTTATAATAATCAATACTTTGGTGGGGCACTTTGACTGGGGCCTCATTTTCTCAAACTTTGAAAGTCAGTGGCACATCTGTGATTTCAGGTTGGTATGCTGACAGTTAATTAACACAACAATTACTCTCAAAATAAATGCTTTTCTGAATTATATTTGCTTCAATCACATAGTCAAAATCACTTTCTTTATGAAGTTGATGAAGTTGACCACCACAATGATTTGTGTAGTGCTTTGCCCTCTCAATCCATCCTTTTCATCTCTGTTTTTACTGGAAACAACAGCATTCAAAAGGTATGCATTGCCCACCAGCAAGCCTGGCATATGATTTCTAAATTACCAAAATTCCCTTCAGTACTCCAAgcagcatttgttttattacagtTTGTAATTTGGTCACACTGCTCATTATGGCATCCTACAGCAAAAACAGTGAGCTGCTTCTACAGCAATCTTTGGTGAAGTGAAAAGAGTGAATACCCGGCAAACCAGTTTTAACTGTGGAAACTGTATTAAAACAAGGGTACAAAcatgttctgagtgtttggTGTAGTAATGCACACCCTGTAATGGACATACTGTAAAAACAGCTGTTAGCAGAAATGTGGAGTGGTTGGAGCCAAGAAAACGTCAGAACAAAATATGTAATTCCTGCATTGATTCAAAACTAGTGGTAGAAACTCAGCAGCTACCTGGTCTGTGAACATATCAGCCTCCAGCTGTTTGATGCTTGTTAAACAGTGCTGTATGTACTTCTCCTGAAGACACAAAATAGACTGTAATACTGATTCAGAAGAAGATGCTTATGTCACAGTGTTGGCTGTATGTCACACATGTCATCCTATTCTCTCCTGAGTTAGCAAGCACAACTGCTCAACTGTGTTACACAAAATGCTATTGCAGATATTCTTACATCTTTATATTTTCTGTTAGTGACAGCAGGAACAATAACATGTTGAGGCTGTTGGGACAAAAAGCATCAATGTTATTGCTCATCaggagtaaaataaaataaagttttgaGCCTTCTGAAAGCTcacatctttattttatttattacttgaTGTCAGCTGTACTGCAGTTGCTGTCTGGCTTAAAGGATTTATGATGCAGCAAAAAGTTTCTCCAGCAAGCGCCTTCTTCTTATATAagagacattttaaaatgcttCCCTTTATTAGTAGCAGTGCTGGAAATGTGGTTTGGAGAATGACCAACATATTAGTAATTTTCTGATTGGTAATTCAGAATCAAAGGGTCATTCCACTGTATTTTTCTAAGCAGGAAGTTTGAATTTCTGACGTCCCTGGAAGGCAGCATGAGACAAAACCGACAGGGAAATGAAACGACTCACGGAGGAGCTGCCGAGGGTGCAAACAATTCCACACATCATCCAAACAAACCCAACAACATAGACCTCTTATATTTGATACTATCCTCATAGAACTTTATACCTTTTTAAATTCATTTCAAGAAATGCATACCtgtagatattatatatatatatattgcacaaCATTTATATGtacattaaaagaaattaaataattaaataaaacgtGTCTCTaaattttttgctattttttaCGTAGCTCTATCTTGTTCATATTTTCCTCACCCAGTGTTGAAAGAATAAATGGGGCTCCagaatacaaaaacataaaaaaggccAAATGAAAAGGCTCAGatgaataatgaaaacaaaacacttgTTTATACCTGCAATATCCATGTGTAGATACCAGGTGAGCCAACAAATGAAGCACAGATACCGGTACATGTATGTTTGATTCTGTGTGCATTCAGAATCATAAAAGAAATGAACACATCAGTATGGAGCAGATTTCAGCTGCATCATCATCAACTCCACCACGGCTTTCTCCGTCACCTCATCCAAGGCTGAAATCTTTTCAAGACATGAAACAATGTACCGTAAACATTGGAAGGATTTAAATGGCACTCTGAGGACGGATGCCGTCAAATCCTTCTTGTAAAACCACAATGAGGAACAGCAAGACTATGAAAGATGGGTCGGGAACCTTCAAGAACCTGGTTTGCAAAGAGTCTGAAACACTGTATTTTGATTAAACTTGCTTTGGTATCAGATAAACACCCgcactgataaaaaaaatcacctttTAGCTATTTTATGAGGAGCAACCATGCCTCTAGCACTGGCCTACTAGCATCTCAGAGCATATCAGACACTTTTTAACCTGGTTCTTGAGCCCCTCAGCCAATGATCCTTACTAGGTTACAGAAAGAAGCAGGAAAGTGAGTGAAAAGGGTGTTGGGAGTATTTGACCCGAGGTTCAAGGGTCCAGCTgaaggaggacaaggaggaaagggagaggaaaaaGGTTTAGGGGAAGTAGTCAGCTTTAACATGCACAGTCCTGGTGAGGAGGAGCAGGCTGCTCTGTCAGCTGGGGTCCCTGTTTGGCCCCTGTGACGGCGGGATCTCCGGCGTCCAGGCTCTCGGACATCTTTTCACAGATGACGTCGACCAGGCGCTCAAAGGTCTGCTTCACATTGATGTTGTCCTTGGCGCTGGCCTCGAAGAACTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129053 lncRNA upstream 85452 15387998 ~ 15389142 (+) True G95681
TU129007 lncRNA upstream 177401 15296284 ~ 15297193 (+) True G95640
XR_005640228.1 lncRNA upstream 206409 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA upstream 206409 15231371 ~ 15268185 (+) True LOC120565370
TU128812 lncRNA upstream 542513 14930512 ~ 14932081 (+) True G95496
TU129122 lncRNA downstream 150812 15628969 ~ 15632805 (+) False LOC120564959
TU129124 lncRNA downstream 154756 15632913 ~ 15633568 (+) True G95729
TU129126 lncRNA downstream 156341 15634498 ~ 15635947 (+) True G95731
TU129130 lncRNA downstream 161595 15639752 ~ 15646044 (+) True G95735
XR_005640275.1 lncRNA downstream 198253 15676410 ~ 15681761 (+) True LOC120565654
XM_039812466.1 mRNA upstream 1831 15470647 ~ 15472763 (+) True LOC120566177
XM_039812446.1 mRNA upstream 91815 15379515 ~ 15382779 (+) True lsm4
XM_039811369.1 mRNA upstream 124001 15343666 ~ 15350593 (+) True ddx49
XM_039811377.1 mRNA upstream 178914 15293595 ~ 15295680 (+) True uba52
XM_039811132.1 mRNA upstream 321017 15127592 ~ 15153577 (+) False rabgap1l
XM_039812071.1 mRNA downstream 19869 15498026 ~ 15505221 (+) False mpv17l2
XM_039812074.1 mRNA downstream 19875 15498032 ~ 15505221 (+) False mpv17l2
XM_039812072.1 mRNA downstream 19881 15498038 ~ 15505221 (+) True mpv17l2
XM_039811900.1 mRNA downstream 28700 15506857 ~ 15512275 (+) True LOC120565844
XM_039810132.1 mRNA downstream 34994 15513151 ~ 15522405 (+) True LOC120564879
XR_005640328.1 other upstream 557988 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 560561 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 853181 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2091850 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2254222 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 842337 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2377480 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2388391 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2390509 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2393553 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile