RNA id: TU129418


Basic Information

Item Value
RNA id TU129418
length 3643
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G95952
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16166202 ~ 16169844 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaatatatatatatatattcttgcATCTTTGattcaacatacacacacaaatatatatatatatgcgtcTTTGATTCGACACTACATTTAAGGAGAAAACATCAAAGCCTCCAAGCACTAATTAGTATGCAGGAAAAAAAGTTTCTGAAGTTTGATAGTTGCTCAAAACTGGGAAGCTTTGCACAGCTGAAGTTCTTCCACTTTGCACTCGTCAGACACCTATTGTTCATTATACAATCACATTGGTGGGGAAAGAAGCAGTGCTGAATTATGGTTGTCTGACAGAAGACAACCGGTCAGTGCAGGGTAATATTGCACACTAAAAGTGCAATCTGTTGCGACTCAAAAGGGGTGTTATGTGCCATGATATCAGTGCAGCATCCCCTAAGCCATACCAGTGAAGACTGTGAAGTTGTCAGTTGAAATCATTTGTTGTCATCTCAACTCAACAtgaagaggttttttttttttctcccaccgGTATCGCaatcttaaaggtgcaatatgtaatattgtgtgtaatactggcagctagcggttaaaatagttactgcagtacaaattcaaaatactggagagtcgtttcccccgccccctcctgcccagactcgaagttcacaggggttgccaggctgagaccgcagcattcaacaatgttgctagatgcttttctcacatagccagacattactccacagcacagcgtagctaacggtagatgctggctatattgacagtcataaaagcccgtgctcacgtggagctctgtaaccaactgacagacacactttttcgccttaaaattacagtatgaaccgctaaaaacaccactagctaccttgccgacggaacacacttcattggcttagaattacggcaacaatcgctaaacacactgcaaactcacagtcctctctttccgatttacagccaccctctcgtggcttaaaataactcaccgttgtcggctccagccgctgacgaggctatacgctgtaaacagccgtgggctgcttgcctggttctccggtaacgttagctagcagttagcagggttagcaaggcggcgttagccaggaccagtcgggatcacgttactggctatgtctcaattgtttttgcgagtaaccaccTCGGGTACTCTAGCAATATAATTCAAtgcgagtacacaaatgttgaaatgacataaaatgcccgtccctagtagctgtgataaattagcctgaagctatgcttacctgttcaggagaaaataagccaactctgcgtccttttgggatctaagttccgtctctggtcacgcaactgttagaaacatgctgttttcttttttttttacgtccggtaaaatctatctccgttgatcctgtttgtttgtttgctgctttcatggctgtactaccgttacagctgtagcgcgctgggtttacgtttttacaggtatatctggcaacccggcctggctgtcaaactgggccgttgataacaacatacagatcaaaacataaacacaaattccgtcacggaatgtaaatttcaaaaagaaaaaatactgacattagcattgttgtcagaaaagatagatagatagaggcattggtgtcatttttggatttattacagtacaaatattacatattggacctttaacatctcattaaaaatgttgagttttgaagtCCTGGATGTTAGAGTATAAGACCCACTCAGCTTTGTTGCTTCTCGATATAAACTTAGTGTGATGCCATATCGAAGAGGTATCTCAAATTTGTAAACACAGATTCAGCATGGCTCTACGTCTCACTGGAATGACTTGTTCTACTCAAAGCATGCGATTTGCAGGAAAAACATTGAGCACCCAAATCAAAGTCTATGTCTTCAGAGCCTAGAGGGAAATatctttttaaacattttggtatttattttttggtcttTCCTTACTTataataacaatacattttGTACTTCGAAACGTGTTGGATCCTCGTGTATTTGTTTTGGAGTATCTTCCTGAAAAAGtagcttttctttgtttgttttttacgtgAGCATGTAAGAGACCCCATGCCTACAAGACCTGTTCCTACTTAATTAACTGTGTAGTGATGTTTACATTGAGAGGAAAAGTGCACTAATGTCTTTTACATGAATTGTGAATGGTGAAGGTGAATTGAAAATGGCAGAGGGAATACCTTACATTGAATCCAAACCCAGGGCTTCTTTAAACAAACGTTTTATGTCTTTGTATTGTACAAATATTGATGTGTATTTTGATAACAAGGATGTTTATAATTCTAAACTTGTTGAAGGACATAATATGCACAGTGACAATTTGAGGCACCAGGATTTTGGGAAGTCTGACTTGAGGGAATATTTCGGATGTACTTCTCGAGGTTTATTGTCTTATTTGTCAGTGGCTTTTGTACCAACTTTCTCCTGAGTCTTCTGTTTCTAAAGCATCAGAATTGTTGATGTGTAAGCTAAGTCCCTCTTCCTCCTTAAAtctcatgatgatgatgatgaccttTTTACAAGATGCTGCTGTTGTGTGGGTAAACAGCATGGAGAGATTGTCCCTGAATGGATCTGTTATTTTTTTGCAGTCTTGACAGAATTGTTTACAATGAACAAACATGCTATGTACTGTACAAACATTTTATATCCTGTGGCTGTTTATGAAGAAACTAAACTCTTTGATACCATGAAAGAAAACAAGTAACATATCTGTTTGtgttcttttaaaaatgttcataAAGAGTAATTTAGCACCAAGCTGAGAAGCATTTAGCGATTTTACATGCCCTTAAGTAACTGGTTTATCATCAGCTTTTTGAAAATGCCTGTTTTTGTAGATGTTATGTAAAGGAGAAACACAGTTTTATTAATAACTGGGCTAAGTAAGGGCTGAGAGGAAACCTGGTTACACAACTAGATTCCTGCTGGGGGGAAAACCGATTTCTTGGTCATAGAAACacttgtaatgttttttttttttaaatatatatgcacatttgcataaaaaaaagatatacaggGAAAGTAATGCTGCAGAGggatgaataaaaaaattgtatatGCGTCAGACAAACTGAAACGGCTGATTTAccactatttgtactactggCACTGTAAGAGACAACCTGTACTCTAAACTGTACTGTAAAAGAGCTTGATAGTtaaataacacattacacataAAATGTGCCAGTCTTCCTTCCAAAATGATTAGAGAGAACCCTTTTTGCAGTGCATGTATACCTAATTTCTCAGGATAACCTGGTTTCTTATGTGAATGTAAACGTAGACAATGCTTGATTGATCGCTACTGTTTGGAAGCTTCAAGCCTGTTTAGCATCTGTAACCACACAGTGATGTGACGGTGGTAagataaaaaaatctaaatcaacACTTAAGCTACTGGAGGTCAGCAATGACTAGATTCTCAGCTGGTGTTAAACTTGCTCTTAAAGAACAAACTGGCAGGTCAAACTGTACATGTGCATGTGTTCCCCTGTGAACTCTTCTGTTCAGTGCATGCTGCATGAGACAAGCACACATCTGTAATACTTGATTGCATGGTATACCGGCGCTGTCGCCCTGTACTGTGTTGTCTTGTGCAACAAATAAAATTTGTATTTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129381 lncRNA upstream 38262 16070354 ~ 16127940 (+) True G95929
TU129315 lncRNA upstream 184704 15980690 ~ 15981498 (+) True G95877
TU129314 lncRNA upstream 185576 15979752 ~ 15980626 (+) True G95876
TU129311 lncRNA upstream 191852 15973181 ~ 15974350 (+) True G95873
TU129289 lncRNA upstream 231622 15931028 ~ 15934580 (+) True G95853
TU129522 lncRNA downstream 119979 16289823 ~ 16290420 (+) False kcnn1b
TU129574 lncRNA downstream 333301 16503145 ~ 16503811 (+) True G96070
TU129581 lncRNA downstream 423032 16592876 ~ 16593182 (+) True G96075
TU129582 lncRNA downstream 506363 16676207 ~ 16676577 (+) True G96076
TU129592 lncRNA downstream 602125 16771969 ~ 16772170 (+) True G96086
XM_039810528.1 mRNA upstream 385 16131146 ~ 16165817 (+) False mast3b
XM_039810527.1 mRNA upstream 385 16131413 ~ 16165817 (+) False mast3b
XM_039810529.1 mRNA upstream 385 16138113 ~ 16165817 (+) True mast3b
XM_039810531.1 mRNA upstream 385 16144113 ~ 16165817 (+) False mast3b
XM_039810530.1 mRNA upstream 734 16138530 ~ 16165468 (+) False mast3b
XM_039810532.1 mRNA downstream 619 16170463 ~ 16173569 (+) True ndufa7
XM_039810533.1 mRNA downstream 5064 16174908 ~ 16204745 (+) True LOC120565120
XM_039810534.1 mRNA downstream 5065 16174909 ~ 16204745 (+) False LOC120565120
XM_039812467.1 mRNA downstream 39530 16209374 ~ 16213553 (+) True LOC120566178
XM_039810981.1 mRNA downstream 46452 16216296 ~ 16225461 (+) True LOC120565304
XR_005640328.1 other upstream 1249596 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 1252169 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1544789 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2783458 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2945830 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 150650 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 1685793 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 1696704 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 1698822 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 1701866 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile