RNA id: TU129522


Basic Information

Item Value
RNA id TU129522
length 598
lncRNA type sense_over
GC content 0.45
exon number 1
gene id kcnn1b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16289823 ~ 16301000 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aattacacacacatgctcagtacctctatatgcactaatggagagatgtcagagtgagggggctgcccatggaaaggcgcccgagcagttgggggtttggtgccttgcgcaagagcaccttggcagtgcccaggaggtgaactggcacctcatCCGACATGACACCTTGTCAGAAGCCTGGTTTGTCTACTTCTACCGATTAAAGAACCTGTCGCTGTATAATGTCATTGCAGAGGGAGAGAACTAATTCAGCCACATGTGCAGGCCTACAGatgctctttttattttattagtacAGAGAAAACTTCAGCATACAGCCTTCATCATGTTTACACAACAAATATGCTTCTGTAGAGTCAACAAAATAACCAAAAAAAGGTCCTTGTCTTAACCATCTCAAGGCCCCAAACTGTGGCTGAATTTGGCCACCCTTCTCTATAACAGACCCTTTAGCCAACAGTGACTTTAAGGTCCTATTGTCCTATTATTGTAAGGTGATGGTGACCTCTGAAAACAGAGGACCCGAGTTATGATCCAAACACTCACAGCTGTGTTGGTGTTTAAGTGTTGGCTCATGCTGCAGTGTGCATAAATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129418 lncRNA upstream 119979 16166202 ~ 16169844 (+) True G95952
TU129417 lncRNA upstream 119979 16166278 ~ 16169844 (+) False G95952
TU129381 lncRNA upstream 161883 16070354 ~ 16127940 (+) True G95929
TU129315 lncRNA upstream 308325 15980690 ~ 15981498 (+) True G95877
TU129314 lncRNA upstream 309197 15979752 ~ 15980626 (+) True G95876
TU129574 lncRNA downstream 212725 16503145 ~ 16503811 (+) True G96070
TU129581 lncRNA downstream 302456 16592876 ~ 16593182 (+) True G96075
TU129582 lncRNA downstream 385787 16676207 ~ 16676577 (+) True G96076
TU129592 lncRNA downstream 481549 16771969 ~ 16772170 (+) True G96086
TU129594 lncRNA downstream 587456 16877876 ~ 16878081 (+) True G96088
XM_039811581.1 mRNA upstream 922 16285698 ~ 16288901 (+) True ccdc124
XM_039811576.1 mRNA upstream 4838 16278045 ~ 16284985 (+) True cluap1
XM_039811578.1 mRNA upstream 4838 16278045 ~ 16284985 (+) False cluap1
XM_039811577.1 mRNA upstream 4838 16278052 ~ 16284985 (+) False cluap1
XM_039810977.1 mRNA upstream 14128 16256858 ~ 16275695 (+) True slc5a5
XM_039812009.1 mRNA downstream 11503 16301923 ~ 16317498 (+) True uhrf1
XM_039811382.1 mRNA downstream 30074 16320494 ~ 16376449 (+) True kdm4b
XM_039811383.1 mRNA downstream 30074 16320494 ~ 16376449 (+) False kdm4b
XM_039811532.1 mRNA downstream 167767 16458187 ~ 16459800 (+) True LOC120565628
XM_039811969.1 mRNA downstream 636199 16926619 ~ 17177885 (+) False ptprsa
XR_005640328.1 other upstream 1373217 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 1375790 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1668410 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2907079 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 3069451 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 30074 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 1565217 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 1576128 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 1578246 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 1581290 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile