RNA id: TU129574


Basic Information

Item Value
RNA id TU129574
length 667
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G96070
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16503145 ~ 16503811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacaagatgcaaaacacttttacaagtcccgaaacaaatttacaaatgacagattcttcacggaaagggaatgtaccacataccggaagtgatgaggtgttgttggtgagcgcagtcaatttgtgttgttgtgagtgagtatatggcgtgaatgaagtttatggtgactttacgtgtggtcggtgtttggagtttttatatgacgcggacctgacggaaacattggaaaaacgggGAACGTATCggcagccgcggccggatcgaagctacagcgggggggcagctgagtccgtctgcagctgcaggacctggagctcactgcccattcctgggagccaaaacgacaccacgcagctggagacccaggccgtattgctgggcccgctggagggaagggaagcccgggagaatcagatccaggactgaacggagcggactgtcacagcctgctgaagtttaaatcacaggtttcctaaagggagtctggcgggactcggactgtggacgacgaaacacgactttaagtctcgttaaataaataaatacatgcagaaataaatgaatcattagtgggggagtgagcctggacatttcagtctgtttaaacttcactttgaaaaagaacctcttagttcagaagggtgaagtttccgtttgtactcatatc

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129522 lncRNA upstream 212725 16289823 ~ 16290420 (+) False kcnn1b
TU129418 lncRNA upstream 333301 16166202 ~ 16169844 (+) True G95952
TU129417 lncRNA upstream 333301 16166278 ~ 16169844 (+) False G95952
TU129381 lncRNA upstream 375205 16070354 ~ 16127940 (+) True G95929
TU129315 lncRNA upstream 521647 15980690 ~ 15981498 (+) True G95877
TU129581 lncRNA downstream 89065 16592876 ~ 16593182 (+) True G96075
TU129582 lncRNA downstream 172396 16676207 ~ 16676577 (+) True G96076
TU129592 lncRNA downstream 268158 16771969 ~ 16772170 (+) True G96086
TU129594 lncRNA downstream 374065 16877876 ~ 16878081 (+) True G96088
TU129700 lncRNA downstream 753582 17257393 ~ 17261030 (+) True G96160
XM_039811532.1 mRNA upstream 43345 16458187 ~ 16459800 (+) True LOC120565628
XM_039811382.1 mRNA upstream 126696 16320494 ~ 16376449 (+) True kdm4b
XM_039811383.1 mRNA upstream 126696 16320494 ~ 16376449 (+) False kdm4b
XM_039812009.1 mRNA upstream 185647 16301923 ~ 16317498 (+) True uhrf1
XM_039811580.1 mRNA upstream 202145 16289884 ~ 16301000 (+) True kcnn1b
XM_039811969.1 mRNA downstream 422808 16926619 ~ 17177885 (+) False ptprsa
XM_039811978.1 mRNA downstream 422808 16926619 ~ 17177885 (+) False ptprsa
XM_039811973.1 mRNA downstream 422808 16926619 ~ 17177885 (+) False ptprsa
XM_039811979.1 mRNA downstream 422808 16926619 ~ 17177885 (+) False ptprsa
XM_039811976.1 mRNA downstream 422808 16926619 ~ 17177885 (+) False ptprsa
XR_005640269.1 other upstream 162097 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 1586539 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 1589112 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1881732 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 3120401 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 1351826 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 1362737 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 1364855 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 1367899 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 1368467 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile