RNA id: TU129592


Basic Information

Item Value
RNA id TU129592
length 202
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G96086
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16771969 ~ 16772170 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggccgatgcaCTATAAATTTGGCGTGGATGCTCAAACCCCTATACGGAACAACTTTGTCATATTTGGTGTCAATCGGGAATAAATCTTGTtaagatacgcaacttcctgtttcgacagccccctacaggaagttggtcctctgtaacttgtgcattgtgttagctatcaaaattcttttgatatatttttgtcatgaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129582 lncRNA upstream 95392 16676207 ~ 16676577 (+) True G96076
TU129581 lncRNA upstream 178787 16592876 ~ 16593182 (+) True G96075
TU129574 lncRNA upstream 268158 16503145 ~ 16503811 (+) True G96070
TU129522 lncRNA upstream 481549 16289823 ~ 16290420 (+) False kcnn1b
TU129418 lncRNA upstream 602125 16166202 ~ 16169844 (+) True G95952
TU129594 lncRNA downstream 105706 16877876 ~ 16878081 (+) True G96088
TU129700 lncRNA downstream 485223 17257393 ~ 17261030 (+) True G96160
TU129761 lncRNA downstream 650895 17423065 ~ 17423278 (+) True G96202
TU129778 lncRNA downstream 848628 17620798 ~ 17636711 (+) True LOC120564955
XR_005640171.1 lncRNA downstream 850814 17622984 ~ 17636720 (+) False LOC120564955
XM_039811532.1 mRNA upstream 312169 16458187 ~ 16459800 (+) True LOC120565628
XM_039811382.1 mRNA upstream 395520 16320494 ~ 16376449 (+) True kdm4b
XM_039811383.1 mRNA upstream 395520 16320494 ~ 16376449 (+) False kdm4b
XM_039812009.1 mRNA upstream 454471 16301923 ~ 16317498 (+) True uhrf1
XM_039811580.1 mRNA upstream 470969 16289884 ~ 16301000 (+) True kcnn1b
XM_039811969.1 mRNA downstream 154449 16926619 ~ 17177885 (+) False ptprsa
XM_039811978.1 mRNA downstream 154449 16926619 ~ 17177885 (+) False ptprsa
XM_039811973.1 mRNA downstream 154449 16926619 ~ 17177885 (+) False ptprsa
XM_039811979.1 mRNA downstream 154449 16926619 ~ 17177885 (+) False ptprsa
XM_039811976.1 mRNA downstream 154449 16926619 ~ 17177885 (+) False ptprsa
XR_005640269.1 other upstream 430921 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 1855363 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 1857936 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 2150556 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 3389225 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 1083467 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 1094378 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 1096496 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 1099540 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 1100108 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile