RNA id: TU129594


Basic Information

Item Value
RNA id TU129594
length 206
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G96088
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16877876 ~ 16878081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCTTTGCCTAAATAGCGACCTTTTCTACAATACTGCTGGTTCTGTGGTGTTGGCGCTTAAAATCTGATGCCTGCAGTGCACCAGAGAAGCATCTAATGAGGCAGGTCAAATAAGGCAGGTCAAAAGAATTGCGTCAATTATCGCTTTCAGTGCATTTGGGCCTtgatttacagcatacagcatatttttcttttgatagagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129592 lncRNA upstream 105706 16771969 ~ 16772170 (+) True G96086
TU129582 lncRNA upstream 201299 16676207 ~ 16676577 (+) True G96076
TU129581 lncRNA upstream 284694 16592876 ~ 16593182 (+) True G96075
TU129574 lncRNA upstream 374065 16503145 ~ 16503811 (+) True G96070
TU129522 lncRNA upstream 587456 16289823 ~ 16290420 (+) False kcnn1b
TU129700 lncRNA downstream 379312 17257393 ~ 17261030 (+) True G96160
TU129761 lncRNA downstream 544984 17423065 ~ 17423278 (+) True G96202
TU129778 lncRNA downstream 742717 17620798 ~ 17636711 (+) True LOC120564955
XR_005640171.1 lncRNA downstream 744903 17622984 ~ 17636720 (+) False LOC120564955
XR_005640170.1 lncRNA downstream 744903 17622984 ~ 17636720 (+) False LOC120564955
XM_039811532.1 mRNA upstream 418076 16458187 ~ 16459800 (+) True LOC120565628
XM_039811382.1 mRNA upstream 501427 16320494 ~ 16376449 (+) True kdm4b
XM_039811383.1 mRNA upstream 501427 16320494 ~ 16376449 (+) False kdm4b
XM_039812009.1 mRNA upstream 560378 16301923 ~ 16317498 (+) True uhrf1
XM_039811580.1 mRNA upstream 576876 16289884 ~ 16301000 (+) True kcnn1b
XM_039811969.1 mRNA downstream 48538 16926619 ~ 17177885 (+) False ptprsa
XM_039811978.1 mRNA downstream 48538 16926619 ~ 17177885 (+) False ptprsa
XM_039811973.1 mRNA downstream 48538 16926619 ~ 17177885 (+) False ptprsa
XM_039811979.1 mRNA downstream 48538 16926619 ~ 17177885 (+) False ptprsa
XM_039811976.1 mRNA downstream 48538 16926619 ~ 17177885 (+) False ptprsa
XR_005640269.1 other upstream 536828 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 1961270 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 1963843 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 2256463 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 3495132 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 977556 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 988467 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 990585 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 993629 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 994197 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile