RNA id: TU129781


Basic Information

Item Value
RNA id TU129781
length 3075
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC120565502
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17670680 ~ 17699048 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGCAGGCATCACTGAAGACCTGACACCGGCTGAATCGGACGTCCACTGTCCTCGGCAGAATTAATCAGGTGTTATCTTATACAAACTGTATCGCCATCAGATGAAGCTGACCATCCTGCGAATGAGAATGAGTCCGCTTCGCCGGAGGAACAGACTTTTTTTCCGTCTCCAAACGACCGGAGAGGCGCAAGGGCGAGAAAATAACGCCCAAAAGTTATTGAAATGAATCGACCTGGCAcgagaagaagaaacagaacAAGCGCTTGCAGCGTTAGCAGAGGGAAGGAAGAGAAGCAGAAGAGCAAACGAGAAAAAGACAAGAGCGATGAAAGAGAGGTCCAGACATGAAGGAGGCacgcatttacacacacacgtgcaacgGCACCTAAAGTCTGTCTGCGgtctaccaccaccaccaccctgccacacacacgcacacacacacatgcctttTACGCTGGAATGGCGTCTCCGTCTTTATCTGCTGCCCTGTGATTACAGACacaatcaacacacacacacacacacacacacacacacacacacacacacagccggaGGCGCGTGAGCAGGTGAGCATTAAGTCAGGCAGCTAAACAGATCACGTCGCGGTATGATAtctgcagacaggcagacagaggagGCCGGTCTGTACCTGCAGGCAGAGAGCAACAACTCCCAGCACACTCGCTAGGAATTTTCAGTGACAGACATAAACTGGGGTTTCCACTGAAGCCAAATAGTTAAAGCCTGATTTGAAAAAGACACATTTGCTTATGAAATAATGAGAGGCCTGTATTTCAGCCCAGAATCTCATGAAAAGATTTCAAAAGAGGCTTTTGTTggttctatttttatttttttacccagAACTCTTATACATGTTGCCTACAGTGCATTAAaaacttttgtgtttttaaagaacTTTTAACATTAACTAAATTTAGCTAACAATAAAGGATGTTAATGTCATTACTCAGTTCATCACTGTCTTGATtataacatttaaatgttttattgagCTTTAGATTTCAGCTTGTATGTAGGGAGTTCTGCATATATCTTTTTAGCGTATAGTTTTCATATTCAACCCAgttcattataaaaaaaaaaacgtctcaTATAGatgcaatttgttttgtttgatctatgtttttttttccaagcaaAGGTTTGCTTTTGCATGCCCAAAATTATTGTTGTGGAGTGATAATAATGTAAGGCTACACCTTGGGGATAGTGAGATGGGAGAGTGTCCAAATACGCCCCTTCCTTTGGTCGCATGTTTAGCCTAACATTCTCCCTTCACCTCAGTTGATGAAAGGATATCCTTTGACATTAATGGAGAACAGCACATTCACACGCTACTGTAATATCGAGTAGAGATGGTTCTTTTGTTATTTCGGAGTAATTCGATAACCTCCAGTATGATTTGTCATTCTGGAATTACTAGGGTGTTTTGACATTGTCGGCAGTACTAATTGTGAAACTGACAGTATCCGTTACACATACTTGTTCTGTTAGTTTGCTTTTGTTAGCACTCCTTGGAGcagctttgacatttttttttacagctttcTTTcattcacaatctgctcagcaTATGTGGCCTTTATCTGTGGCGTCCTGTATCACATTCATAGTAATTATTTTTTGGGAGATGCCCATTGCAGTTTTGGTTTTCTACTGAGCAGCGTCACTGAACCAGCTGTTATGTTGTTGCTCAAGACAACCTCCACAGTAGTTACTAAATAAGGATGAGCTATCAGTTCATGTGTCCTGCACAGATTTTCGCAAGTAGTCCTGCAATTTACTGCACCTTAAAGCCACAAACTTGCTTCTCTTCTTTTCCATCTTTCCTTAAATTGAAGTTGTTTCTCCCATTAGGCAGATCGGCCATGTTCTGTGATCACCATTATTTCTTAGCTGAggtttttcttgtctttttcaaaGCTCTTTATATTTAGCCATAAAAACACCTTATGAATTTTTTACAAGTCACAACTCTCCCCACACAACTACCACATCCACTTATCTGAAAATGATTCAGTGGTTAAATGTCAGAGCTGTCTGTGCCATTAAGGCCAGCATGTTTGAAGGAAGGACACCCTTGCCTGCCCTCTCCATcctcccccctctgtctcttcttatttctctcccttctccttcctctctccccttAGCTCCCTCATCATCCACCCCCACCCGACCCAACCCAGGCAGGTTTGAGCGCTGATGTGCAGACCTTGTCACTCAGATTAGGGCCACATTGTCAGCTCAGGGCCCTTCTCTCTCTAGATGCGTGTCCCGAATCTTTCTTCCTACTGTCACTCTCGTCCTGCGGCCAGAGAAGACCTTATAAAGCAACATTCCTTTTAATCCACTTCTGTCAATTCCAACATTGTCACTCAAATCACTGTTCAGGAGAGTGGAGAGAGGCCGAGTTTGTGGTGTCCCTCGCAGCGAGGACTGTGCTTTTTGGCCCAAGCTTGGCTGACGTGTCAACAGCTAGCAAattggattttatttatttttttgggcatttttaggcctttatttccacaggacagatgaagacatgaaaggggagagagagggggaatgacatgcttTTCAGAGGACTGATATACACAGGGAATGACAAAGTAGAAGCAGCACTTGTGATccaaagacaaaaaagagaaGCACTACAGTCTTTACTTTTAAGCATGACTTAGAAATTAATGTCTTTAAAAATGTTCAGATATTAATACTCATTGTATTTTGCCTAAGAGTAAAGGCTATCAAAGTCATGGTGTTATTTTCAACTCTGTTTTCTGTATGAAATGAGTGTTTGGCAGGACATGATATATCCACCACATCATCTTCATCACTCCTTATCATGCTGTAAAAGAGTTCCAGCACCATAGTTATCATCCGACCACATCTTGACTCACTGCCGCAGTTTAATTGTGAAGTCGTATGTAATTGCTATACAGCAGCACTGTGCAGCTTGATTTTTGTGCTTCTCACAAAAgtcagcactttttttttctcatgatgAGCAACAATGATTCAGCAGTGTGTAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640171.1 lncRNA upstream 33988 17622984 ~ 17636720 (+) False LOC120564955
XR_005640170.1 lncRNA upstream 33988 17622984 ~ 17636720 (+) False LOC120564955
TU129778 lncRNA upstream 33997 17620798 ~ 17636711 (+) True LOC120564955
TU129761 lncRNA upstream 247430 17423065 ~ 17423278 (+) True G96202
TU129700 lncRNA upstream 409678 17257393 ~ 17261030 (+) True G96160
TU129849 lncRNA downstream 192604 17891652 ~ 17892398 (+) True G96273
TU129944 lncRNA downstream 887580 18586628 ~ 18586965 (+) True G96341
TU129956 lncRNA downstream 913981 18613029 ~ 18613260 (+) True G96353
TU129966 lncRNA downstream 920510 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA downstream 920510 18619558 ~ 18621342 (+) False G96361
XM_039811535.1 mRNA upstream 203198 17370102 ~ 17467510 (+) True LOC120565631
XM_039812333.1 mRNA upstream 301618 17344165 ~ 17369090 (+) True kif14
XM_039812402.1 mRNA upstream 327159 17338407 ~ 17343549 (+) True ddx59
XM_039812401.1 mRNA upstream 327288 17337825 ~ 17343420 (+) False ddx59
XM_039811673.1 mRNA upstream 415160 17246779 ~ 17255548 (+) False si:zfos-943e10.1
XM_039812403.1 mRNA downstream 50384 17749432 ~ 17753834 (+) True srek1ip1
XM_039811759.1 mRNA downstream 156583 17855631 ~ 17859411 (+) True nppc
XM_039811629.1 mRNA downstream 165289 17864337 ~ 17875307 (+) True ncl
XM_039811848.1 mRNA downstream 221791 17920839 ~ 17926636 (+) False polr2h
XM_039811847.1 mRNA downstream 222842 17921890 ~ 17926636 (+) False polr2h
XR_005640269.1 other upstream 1329660 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 2754102 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 2756675 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 3049295 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 4287964 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 156589 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 167500 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 169618 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 172662 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 173230 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile