RNA id: TU130372



Basic Information


Item Value
RNA id TU130372
length 345
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G96648
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20000828 ~ 20002125 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATCCTTTTCTTGGGCAGCCAGTTTTGAGGCAGATTGAGACAAGGCCTCAACATATGCGATCACTTCCACTGAGGTGAGTTCGCCGGACGTCTGCTTGACAATTTCCTTCAGTAGACTCTGGGGCTCCGTGAGGTTGCTCATATATTCAAGTGTTTTGTTGACAGTCTGTGTGATACAGCCGATGTTGTCATGGCAGTATTTTTGGGGATgctCTTTACATCTTACACCTCTCTCTGGATGAAAGTGCTGAGTGCCTGAAGTTGGGATGTAATCACGCTGACAGGTGCAATAGAAAGATCCATTCGTATTATGGCAGTGTGAGTTTGGTCCACAGACCTGTCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU130327 lncRNA upstream 249456 19751120 ~ 19751372 (+) True G96616
TU130321 lncRNA upstream 315743 19684150 ~ 19685085 (+) True G96610
TU130324 lncRNA upstream 317752 19677168 ~ 19683076 (+) True G96613
TU130157 lncRNA upstream 489620 19488090 ~ 19511208 (+) True LOC120565771
XR_005640283.1 lncRNA upstream 490018 19387232 ~ 19510810 (+) False LOC120565771
XR_005640277.1 lncRNA downstream 44893 20047018 ~ 20047372 (+) True LOC120565691
TU130377 lncRNA downstream 45754 20047879 ~ 20049217 (+) True G96653
XR_005640207.1 lncRNA downstream 264526 20266651 ~ 20289381 (+) True LOC120565226
XR_005640266.1 lncRNA downstream 466428 20468553 ~ 20470747 (+) True LOC120565515
TU130455 lncRNA downstream 472682 20474807 ~ 20485886 (+) True G96692
XM_039811659.1 mRNA upstream 414183 19574855 ~ 19586645 (+) True cth
XM_039811787.1 mRNA upstream 471334 19520942 ~ 19529494 (+) False LOC120565772
XM_039811788.1 mRNA upstream 471334 19520945 ~ 19529494 (+) True LOC120565772
XM_039811789.1 mRNA upstream 471334 19520945 ~ 19529494 (+) False LOC120565772
XM_039811429.1 mRNA upstream 659772 19338866 ~ 19341056 (+) True fam43a
XM_039810777.1 mRNA downstream 154285 20156410 ~ 20256593 (+) False adgrl2a
XM_039810779.1 mRNA downstream 154285 20156410 ~ 20256593 (+) False adgrl2a
XM_039810792.1 mRNA downstream 154285 20156410 ~ 20256593 (+) False adgrl2a
XM_039810794.1 mRNA downstream 154285 20156410 ~ 20256593 (+) False adgrl2a
XM_039810785.1 mRNA downstream 154285 20156410 ~ 20256593 (+) False adgrl2a
TU130185 other upstream 469151 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 1215192 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 2128417 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 2128981 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 2132026 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 1688772 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 2281521 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 2483386 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 2490832 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 2569934 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile