RNA id: TU130980


Basic Information

Item Value
RNA id TU130980
length 496
lncRNA type sense_over
GC content 0.48
exon number 4
gene id lsm7
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21554894 ~ 21557731 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTCCGTGTCACACAGCTAAAACATGGCGGTGAGTTCGTTTGGTTTGCGCTTTCATTCAAACATCTTTTTACCTTTGTGCCCACTAACATTCTCATGGGCATCTTTAGCCACTAATTGTTTATTCCCAACACGACCTGAGACGTAGAAGAGCTATTCGAAAgataaagaaaagaagaaaaaggagagcATCTTCGACTTGTCAAAATACATCGACAAGCCGATTCGTGTGAAGTTTCAAGGAGGACGAGAAGCCAGCGGTGTCCTGAAGGGTTTTGATCCTCTGTTGAACCTGGTGCTGGATGGCACAATCGAGTACATGCGTGATCCAGATGACCAGCTGAAGCTGACAGAAGACACCAGGCAGCTGGGGCTGGTGGTCTGTAGAGGAACCTCCGTAGTGCTAATCTGTCCCCAGGACGGCATGGAGGCTATACCAAACCCGTTCATACAGCAACAGGATGGCTAACACACAGCCTGTCACTCGCTGAGAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130923 lncRNA upstream 98153 21368118 ~ 21456800 (+) True G97009
TU130941 lncRNA upstream 115558 21411363 ~ 21439395 (+) False LOC120565275
TU130926 lncRNA upstream 181420 21372941 ~ 21373533 (+) True G97011
TU130868 lncRNA upstream 240433 21310912 ~ 21314520 (+) True G96963
TU130765 lncRNA upstream 380646 21127063 ~ 21174307 (+) False G96906
TU131003 lncRNA downstream 100819 21658550 ~ 21676349 (+) True G97064
TU131004 lncRNA downstream 100819 21658550 ~ 21676349 (+) False G97064
TU131039 lncRNA downstream 185682 21743413 ~ 21744681 (+) True G97096
TU131133 lncRNA downstream 383374 21941105 ~ 21942404 (+) True G97170
TU131132 lncRNA downstream 385234 21942965 ~ 21944561 (+) False G97170
XM_039810654.1 mRNA upstream 2699 21539227 ~ 21552254 (+) False LOC120565175
XM_039810653.1 mRNA upstream 2699 21539331 ~ 21552254 (+) False LOC120565175
XM_039810652.1 mRNA upstream 2699 21540199 ~ 21552254 (+) True LOC120565175
XM_039810912.1 mRNA upstream 113395 21411336 ~ 21441558 (+) True LOC120565275
XM_039810656.1 mRNA downstream 1472 21559203 ~ 21571799 (+) True tmprss9
XM_039811756.1 mRNA downstream 19663 21577394 ~ 21580844 (+) False enc3
XM_039811757.1 mRNA downstream 21254 21578985 ~ 21592150 (+) True enc3
XM_039810145.1 mRNA downstream 293311 21851042 ~ 21853412 (+) True s1pr4
XM_039810498.1 mRNA downstream 337739 21895470 ~ 21909198 (+) True ncln
TU130185 other upstream 2023276 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 2769317 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 3682542 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 3683106 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 3686151 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 133166 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 725915 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 927780 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 935226 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 1014328 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile