RNA id: TU131429


Basic Information

Item Value
RNA id TU131429
length 685
lncRNA type inter_gene
GC content 0.45
exon number 15
gene id LOC120566218
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22571754 ~ 22576548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCACTCCTCGGCTGCCTACAAGGTGTGCTTACACTGGTTGAATTTACTTTTCCGTGACCTCCAGAACAGGTGGTCTCCTATTCTTGGATCTAGTGCATCTTCTTGGATCAGTTGCAGAAACAAGACTTGCAGTACAAAAGGCCACGTGAAGGCCTTTCAACTGGATTGCTGTAAAAATGAACAGGGACCCAAGATGGTCTTGGGATGTGCTGAGACATGAAGAGACAGGAGCAGAAGGAGGTGTGCTTACACTGGTTGAATTACCTTTTCGGTGACCTCAAGAACAGGTGGTCTCCTATTCTTGGATCTAGTGCATCTTCTTGGATCAGTTGCAGAAACAAGACTTGCAGTACAAAACACCATGTCAAGGCATGTGAAACCTTGCTGTAGAGACTGTTCACAGCCAGCCTTGTGTCGATAGTCATAAGAGCAAGAAGTCTTACAAGCATTTTATGATCATTGCCTTTGGAGGCGGGTTTCCTCAAGGATGAGGAAGAACTGGAGCTGTAGCCTGACATGAATGCAGCGGTGAAGACTCTTTGGCCCAGAGGAGCAAGCCTACATGGAAGTGTTTGTGCTAAAATTTTGTGCTTTTGGATGGCGACCAGACAACCAATGGACAACTCATGAATATAAAGAACTGATGTgtcaataaatattaaaataaatacagtgtCTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131333 lncRNA upstream 248899 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 255396 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 397361 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 413796 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 478380 22091389 ~ 22093374 (+) True G97263
TU131439 lncRNA downstream 17948 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 18239 22594787 ~ 22595277 (+) True G97410
TU131444 lncRNA downstream 80951 22657499 ~ 22676178 (+) True rnf11b
TU131445 lncRNA downstream 80951 22657499 ~ 22674237 (+) False rnf11b
XR_005640278.1 lncRNA downstream 204059 22780607 ~ 22800145 (+) True LOC120565733
XM_039812096.1 mRNA upstream 1454 22530087 ~ 22570300 (+) False osbpl9
XM_039812097.1 mRNA upstream 1454 22530087 ~ 22570300 (+) False osbpl9
XM_039812099.1 mRNA upstream 1454 22548893 ~ 22570300 (+) True osbpl9
XM_039812098.1 mRNA upstream 1454 22553561 ~ 22570300 (+) False osbpl9
XM_039812091.1 mRNA upstream 42745 22501548 ~ 22529009 (+) True abl2
XM_039810961.1 mRNA downstream 649 22577197 ~ 22582655 (+) True tor3a
XM_039810960.1 mRNA downstream 7658 22584206 ~ 22589319 (+) True calr
XM_039812081.1 mRNA downstream 15095 22591643 ~ 22623535 (+) True eps15
XM_039812083.1 mRNA downstream 15095 22591643 ~ 22623535 (+) False eps15
XM_039812082.1 mRNA downstream 15095 22591643 ~ 22623535 (+) False eps15
XR_005640308.1 other upstream 70739 22492957 ~ 22501015 (+) False soat1
XR_005640282.1 other upstream 83651 22485511 ~ 22488103 (+) False LOC120565764
TU131315 other upstream 284482 22283646 ~ 22287272 (+) True G97321
TU131036 other upstream 789754 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 3040077 19530767 ~ 19531677 (+) True G96513
TU131620 other downstream 744974 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 898234 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 2205370 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 2275753 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 2291469 24868017 ~ 24873874 (+) False elovl1b

Expression Profile