RNA id: TU131444


Basic Information

Item Value
RNA id TU131444
length 3762
lncRNA type sense_over
GC content 0.42
exon number 5
gene id rnf11b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22657480 ~ 22676178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGGAAAGTCCCTGACAGCCAGGGAGGCTTCAGACAGGAAGACTACGATGAGGAGCAGATCCATGTGCCTATCTATCACCCAACACCCAGCCAAGCACGACTGGCCACtcagctgacagaggaggagcAGGTTCGCATCGCACAGCGAATCGGACTCATCCAACACCTCCCGAAGGGCGTGTACGACCCAGGGCGCGATGGCTCTGAGAAGAAGATCAGAGAGTGCGTCATCTGTATGATGGACTTTGTGTACGGAGACCCCATTCGGTTCCTGCCCTGCATGCACATCTATCACATGGACTGTATAGATGACTGGCTGATGAGATCCTTCACCTGCCCCTCCTGCATGGAGCCTGTGGACGCCGCGCTGCTTTCTTCCTACGAGACCaactgacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagttagcCTGCTGGACAGGATTAGAGGAATGAACAGAGTGTTAGTGTTAAGGATGAGCAGGTAGGAGCTGGATCGAGGAGAGCGGTAAAAGACAGGAACGGACAATGGGGGTTATGAGGATACAAGTGTAAAGGGAAGTCAAGGGGAGGGGATGATGGTAAACTGATATGATTATGACATTTCCAAGATCCTCTTTTATATGCGTGAATACACAAACAACCGTTCCCATTCACACCATATAGGATTAAGGTAATGTGACCACCATCATCAGGCTGCAGATTGTGCTTAATGGACTGCTGAAGCCTGATTGCTATAATGTCCCACTGCAAGACGAGAGGAAAGAAACGCCCTTCAGAAGATCTACCAGATGCTTTGACATGTCTACAAAGGGTATGACTCCACACACACTGTTGCAGAGTCATATCTGCTTGCAAAACTGCTACTGATGCAGATGTGTGATTTAAAGACTGCTGGAACTGCACGTCAGACTTGAGACTACGGACATCAGATATGTTCTGCAGACACACCACAGGCCTTCACTGGACCAAGGCACCCAGGCCCGTagttgtctgtctgtaaagacCTTTTGTGAGAAAAATAAGATTGGTCGTTTGATGGATTGATCGTCCCGTAGCTTTGTGAAATCtgttctgtgtttgttttgtcagtCAGCATAAGGGCTTCGTCGAACCAGTATAACACAGATATGACAGAGgaaatacagtatgtgctttTGTCACTAATGTTATCGATAGCTGGTCGACTGTTGCTTTCAAGCTATCGACTCCTCATGACTTTCTCAGTCACAGTGAGATCTCAGATTATTGGCCAAAGCACTAGTAGACCAGTTAACAAACCATTGATACAAATCAGTGGTATTTGCACTTCTTATATTAGACTTATGACAAACGTTGACCATATGCATTTAGTAATTATGTCAAAGTGAAGTATGTGATTTCAAGGATGGAattaaaaacatacacaagGGTTGGGCTCATTTAATGTGTTTGCATATGTTAGGTATCTCTTCATTCAGCATCCTGTCCTGTGGCAAACATGTTCATAAAACCAGACCTAAAGCAAACACGGGAAACGGTTAACGCTGGCAGGCGCTACCACAAGGACACTGGTGATGGAAAATGTGCTTATGGGTTGTGTGTCAGTAAATATAACTGAAGATGCTTATTTACCTAATGTGGTCAGAATCAGCCACATTGCATTGTAATGTGTTCCCAGTTTAGAAAGGTTATGTTTCtatccatttttattttcaatcaaTTTGAGGCCTCAGTCATAATGAAAgtccttttttaattttaaaatgtctaTTGCCCAAGTCATCCAGTTTACTGTTAAagcacaaagaaataaaattgtTCAGTTATACTTTCCTTCTCCCTGCTAACTTTGGGATGCAGGTGAGTCGGTAACACTTTGAATTATGCAGGAAATGGTAAGTCATTTGAGCTTCCCCTGCATAAATGCATGATACAGATCCAACgctgtgtgtgtgtgtgtgtgtgttatggccTTTTGTGTATGTTTGAGAAAGTGTGGGTGGGGGATGGAGTTGGCACCTTAGTTTCTGCACAGCATTTTAATCTATGTAACTCTTGTTGTACATTGCCCTCCATCAGTAAGGTGAAGCTTCATGGCCTTAGGTTACACATGAGTGAGTGGGTATCAGCTGCTAAAATGTGGAGCAGTGGAGTCCATATAACTTCAAGAGGAGGTGGGGTGATACAGGGATAGTTTAGACTGTGAATGCTGCTGCAGAGCTGTCATTGCACATTCCATGTTCCTCCCACTTTCTTCTCTACTGTGGTACAGTGGACGGACGTTTCATATACAAAAGCCTTTTGGAaggttttccttttttccatCTCAGTCTGGATGTAATCATGGGGTTGATTAACAAAGTTATAGAGGAATGCCATTTAAATTAAAAGTAGCATATACTAAGCAGCCATTGTTGGTTGTTGTTTGTCAACACATAGTCTGAGTCTGAGTCATAGCCAGACCTACCTATCTCCGCAGTGCTGTGTCAgtgctggagtatggtctggctacattGCTTATGTGCAGatcttcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtGCGCACCCGCGCGCTGGGGGTTACAGACCTACAGTACCAGTCGAAAGTAAATTAGTAGATTACTTTTGCATGAGTATACATTTTTTAGGAAAATGCTGCTTAGTACACCTTTTAAGAATTCCAGTATGTTATTTCCATGGTCaatatttgtgaacatgagCTACTCTCTCTCAAAGCCAGAAACCAGAGAAGTAAGTCTCAAacttgtgatgtcatcaggtaTAAAGTCTGGACCTGCTCCATAGTCAATGaatgcttgttttcttttttttatacccAAACAAGCTTTATTCTCGTGttgtgttctcagttctgaaacagaaaatgtaccCATGTGCTCTCAGTGTCATCTCAAATATCTAACCCAATTCATTGTCTATGGAGCAGTTCCAGACTTTATTATTGTATGACATCACAAATTTGAGTTTTAACACTAGTTTTTGGATTTGGGAGAGAGTTGTTCATGTTTACTAATATTTTTGGACTGTCTTAGACCATAAGAATAACCTATGAATTTTCAAATTGGGTATAGTTCCCCTTAAAACCACTTCAATAAACTACGTAAATAATCAAAGGAACTAAATAAAAGAAACCACATACTGGTTAATGTGAAAACTAGCACTCTTCCAAAGCTACATGTTTATGCATTAGTGTGGCACTTTGTGGAGCTGCTTCATTTACTCTCTGTGGGAAATTTGACATGTTGGAGCTCTTGCAACTGAATAGATTTCCAGTAAGATCAGTTCAGTTACAAAATGTGCTCATATCCCTGGGAAATGACTCACTGGTGTCTGTCATTCGCTAACAATTAACAGCTGCACAAATGTTTCTCATTCATGTGCCAGATAGGCTCGGTCTTTGAATCTCGGGAGAAACCTAAAAGTGTCCACTTTTTACAGGAATGATAAGTAAGTGCTGATTAAGGGTGGATTTTTTAAGTTCAGGATTGAACATTAAGGTTTGCTCACATGTGAATGGGGTATGTgtgctgtatgtttgtgtatggcTGCTTGTTagacctttccttgtttgtaaGCATACATGTACATAGCTATGTACTACAGAAAAGTAATAAATGGACATTGCAACTGAAAATAACTGCCACTGGGTGTGGTTATTTCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131439 lncRNA upstream 62222 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA upstream 62222 22594787 ~ 22595277 (+) True G97410
TU131429 lncRNA upstream 80951 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA upstream 80951 22571795 ~ 22576548 (+) True LOC120566218
TU131333 lncRNA upstream 334644 22322492 ~ 22322855 (+) True G97338
XR_005640278.1 lncRNA downstream 104429 22780607 ~ 22800145 (+) True LOC120565733
TU131455 lncRNA downstream 104596 22780774 ~ 22799672 (+) False LOC120565733
TU131548 lncRNA downstream 189649 22865827 ~ 22870448 (+) True G97485
TU131554 lncRNA downstream 238338 22914516 ~ 22918731 (+) True G97489
TU131560 lncRNA downstream 605496 23281674 ~ 23282671 (+) False spata6
XM_039812084.1 mRNA upstream 473 22625085 ~ 22657026 (+) True ttc39a
XM_039812085.1 mRNA upstream 473 22632634 ~ 22657026 (+) False ttc39a
XM_039812081.1 mRNA upstream 33964 22591643 ~ 22623535 (+) True eps15
XM_039812083.1 mRNA upstream 33964 22591643 ~ 22623535 (+) False eps15
XM_039812082.1 mRNA upstream 33964 22591643 ~ 22623535 (+) False eps15
XM_039811742.1 mRNA downstream 21902 22698080 ~ 22764088 (+) True faf1
XM_039810236.1 mRNA downstream 98830 22775008 ~ 22778191 (+) True dmrta2
XM_039811721.1 mRNA downstream 140373 22816551 ~ 23246315 (+) True agbl4
XM_039811718.1 mRNA downstream 140373 22816551 ~ 23246315 (+) False agbl4
XM_039811719.1 mRNA downstream 140374 22816552 ~ 23246315 (+) False agbl4
XR_005640351.1 other upstream 81297 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 82351 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 82575 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 82827 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 83807 22573630 ~ 22573692 (+) True LOC120566226
TU131620 other downstream 645344 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 798604 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 2105740 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 2176123 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 2191839 24868017 ~ 24873874 (+) False elovl1b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_04753467_04770912.mRNA True 1679 mRNA 0.46 5 CI01000010 4753231 ~ 4771674 (+)