RNA id: TU131620



Basic Information


Item Value
RNA id TU131620
length 388
RNA type TUCP
GC content 0.57
exon number 1
gene id pole4
representative False

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23321464 ~ 23323484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CGGAAACACATGCTGCTGGCGCGCTGTTGTATGATGTTGTTGTCATCATCTGTGACATGTTGGTAGAAAACGGTAGTgaattgtgtgtttttgaagtATAACGATCGGGTTAAAAACGGAGAATGGCAGCAACAGCGGCTACACCTGTCACCCCCACGGAGCCCGACCCTGACCGGTGTGTGAATGAGGAGGAGAGCCGCGGGGCCGAGGCGGAGGAGGTGAACACCCAGCAGCAGACAGGCCCCGCGGCCGCCGTGAGCCACAGCCGACTGTCCAAACTCCCGCTGGCCCGCATCAAGGCGCTCATGAAGACCGATCCAGACGTGTCGCTCGCCAGCCAGGAGTCTGTGTTTATCATCGCTAAAGCCACGGTAAAAACAACAACGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131568 lncRNA upstream 17831 23300844 ~ 23303691 (+) False LOC120565086
TU131560 lncRNA upstream 38851 23281674 ~ 23282671 (+) False spata6
TU131554 lncRNA upstream 402791 22914516 ~ 22918731 (+) True G97489
TU131548 lncRNA upstream 451074 22865827 ~ 22870448 (+) True G97485
XR_005640278.1 lncRNA upstream 521377 22780607 ~ 22800145 (+) True LOC120565733
TU131626 lncRNA downstream 1048 23322957 ~ 23323328 (+) False pole4
TU131627 lncRNA downstream 1048 23322957 ~ 23323484 (+) True pole4
TU131625 lncRNA downstream 1180 23323089 ~ 23323484 (+) False pole4
TU131629 lncRNA downstream 2063 23323972 ~ 23324176 (+) True G97537
TU131630 lncRNA downstream 2350 23324259 ~ 23324499 (+) True G97538
XM_039810442.1 mRNA upstream 17831 23300806 ~ 23303691 (+) True LOC120565086
XM_039811738.1 mRNA upstream 39686 23249130 ~ 23281836 (+) False spata6
XM_039811736.1 mRNA upstream 39686 23249131 ~ 23281836 (+) True spata6
XM_039811737.1 mRNA upstream 39686 23249132 ~ 23281836 (+) False spata6
XM_039811739.1 mRNA upstream 39686 23250050 ~ 23281836 (+) False spata6
XM_039810444.1 mRNA downstream 9869 23331778 ~ 23335697 (+) True ccl44
XM_039810429.1 mRNA downstream 56822 23378731 ~ 23380375 (+) True LOC120565078
XM_039811696.1 mRNA downstream 98035 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XM_039810994.1 mRNA downstream 263892 23585801 ~ 23588140 (+) True fam32a
XM_039810986.1 mRNA downstream 269543 23591452 ~ 23599922 (+) True hdgfl2
XR_005640351.1 other upstream 745320 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 746374 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 746598 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 746850 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 747830 22573630 ~ 22573692 (+) True LOC120566226
TU131697 other downstream 152873 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1460009 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1530392 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1546108 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 2210916 25532825 ~ 25547089 (+) True G98194

Expression Profile