RNA id: TU131650


Basic Information

Item Value
RNA id TU131650
length 2180
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G97554
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23352840 ~ 23363480 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGGGCTCACAAGCCAAAAAGTTGGTAGTCAGTGCTGTAAAGTATCAGAAGGTTTCattccaaaatgtttttttattgtaaaagtgCAATATTGACTCGTTAGAGAAAACATTACGAGACATAATTCAGGCAGACTGTACCTttaacattcatttatttccatCAGCATATTGTTGACTCCCTATTACATTACCATATAccggtttgtttttttacagttcaTTTTGGAACGAAAACGTAATTACACACTTGAATATTAGATAAggttattaatattatacaaaTCAAATGGTTGTattaaaacacataaaatatattatataaaccACTAGCATAATGAAAAAGAGCCAATAAGATCACCCAAGGATGTAAGATTAGTATTGTAATTAAACTAACATTTCAAAGCCAAAACATGGTTTATGATTAGTACTAAATCACTCATCTGTAATATAAATGCTGCATCGGAGACAGGAAATCATTTTCATCAAACTCAGTGGTATTAAGTATTCATTTAAGGCTACTGTGCAAATTCTCAGTTATCAAACAACATTCACTCCTGCTTGGTTAAGGCTTATAGTTTCATCTTGTACTTTTGGTCATTgacaaaaaacaacttcaacACATTTTGAGACAGTTGATTCCAGTGTGAAACTATAGTGGGTCTGCTTGTATTAAAACAGCAAATGACCAACTTTCCCTTGCTGAACCTGATAAAGGTGAGAGTGAATATATTGAAAAATGATATGATAGGTGTTATCCAGAAGTAGGTCCAGCTTGTGGAATGTTGTTTGTTTGAGAGATAATTAGTGTGACTTGGAAGAAAAACATTGTTGAACTACAGTTGTTATTTTAGcagctgcagacacagaaagagagaagataCTTTTCCACATGTGACTGACATCAACAAGgtaaatagaaaagaaagaagaatttGTGAAAAGACATTAGTATGCATTAAAACATTGTGCATACAGGTATATGGTTTGTTGTACAGAATACTGTACCGATATAAAAAATGATTACAAACACTGCTTAACATATTTTGATCACTTTACAGTGCCTTGGCTTTTACTTTGGCATTTGATGCTGTAATCTTGACAGGAATGAATGCAAAGcacggttttgtttttatttaaatgagaTGAAACGCTGATCATTAATGATACAATAAACACCAATGAACAATCTCGATGTATCCAAACCATCAAGACCAACTTTGGTCAGCTGTAGGCAAAAAGGATCAAAGACTAGGATTGCTCCCTAAGAACTCATATCAAGCATGGATTGAGGAGATTTGGCAAATATCTCCAAAGCGGGAATGAATCAAGAAGGCTATgctaaaataaatttaaagctccattgtgtaatgttttgagttgattcttagcaacaaaaaaaaaccttgttctttcacaaatatgtgctcattcatgtgtaattacttccaccaactaatcaaagtattctcgtaagtgtagaatctgccattcagaatcgttcagaatacatacgagccaatcgctcgtatgtattcatgacatgttgcgcctccatttttaaaacatattagccaaagagggacatacctccgcctttcgcgcttttacactccgtggcaccgtgacgaatgccggGGGGAGATTACTCGATATGccagcagatttgaaagcctgtttaagatggaggatcacgcggatactttactaacattagcttgcatttgtttgggaacctgatagctgatgttagcaatgaaatggtaccaaaataacgaaAACGCAAAACTATTATTAaactggaaggaacactcacggacaaagtcgtacttcttggaataatacggccacTGTAGCAGTTAAAACGCGATCGGAATGAGAgaggctagaaagtaatattcagttggttgtcatatacaatttcaccgctagacgggagaaattcttacacaatgtagctttaacaaCTATGTAGCTGTGTAGCAGAGAGATATGGAAGcattattttatgaaaaaaAGTTCTTCAGGTTATTTGGTCGATAAGGAAGGGCAGGTGGGATATCCTCTTGTGATGTTTGATGGCTTATGCTGGGATGCAGTGAGATGTTTGGTAGCACACTTGTGTTAGGGTTTAGATGTCTTTGGGTAAACAGCAGATCTGCATAGTCAGTCTTGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131630 lncRNA upstream 28341 23324259 ~ 23324499 (+) True G97538
TU131629 lncRNA upstream 28664 23323972 ~ 23324176 (+) True G97537
TU131627 lncRNA upstream 29356 23322957 ~ 23323484 (+) True pole4
TU131625 lncRNA upstream 29356 23323089 ~ 23323484 (+) False pole4
TU131626 lncRNA upstream 29512 23322957 ~ 23323328 (+) False pole4
TU131669 lncRNA downstream 15270 23378750 ~ 23380374 (+) False LOC120565078
TU131670 lncRNA downstream 37549 23401029 ~ 23425798 (+) True G97572
TU131698 lncRNA downstream 96803 23460283 ~ 23461368 (+) True G97597
TU131702 lncRNA downstream 101758 23465238 ~ 23466660 (+) True G97601
TU131703 lncRNA downstream 103260 23466740 ~ 23466993 (+) True G97602
XM_039810444.1 mRNA upstream 17143 23331778 ~ 23335697 (+) True ccl44
XM_039810185.1 mRNA upstream 29748 23321464 ~ 23323092 (+) False pole4
XM_039810442.1 mRNA upstream 49149 23300806 ~ 23303691 (+) True LOC120565086
XM_039811736.1 mRNA upstream 71004 23249131 ~ 23281836 (+) True spata6
XM_039810429.1 mRNA downstream 15251 23378731 ~ 23380375 (+) True LOC120565078
XM_039811696.1 mRNA downstream 56464 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XM_039810994.1 mRNA downstream 222321 23585801 ~ 23588140 (+) True fam32a
XM_039810986.1 mRNA downstream 227972 23591452 ~ 23599922 (+) True hdgfl2
XM_039810987.1 mRNA downstream 227973 23591453 ~ 23599922 (+) False hdgfl2
TU131620 other upstream 30931 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 776638 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 777692 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 777916 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 778168 22574591 ~ 22574672 (+) True LOC120566225
TU131697 other downstream 111302 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1418438 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1488821 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1504537 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 2169345 25532825 ~ 25547089 (+) True G98194

Expression Profile