RNA id: XM_039810167.1


Basic Information

Item Value
RNA id XM_039810167.1
length 5334
RNA type mRNA
GC content 0.46
exon number 16
gene id rexo1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14391912 ~ 14409422 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaatatattaattGAAAATACCCACTTTACGTTACGAGCAAATGTTTTGGTTAGACACATTAAGGTTGACATTAAGTTTTCTTTAGCTGACCGTTGGGCGGTTGGGGATCGGAGTTAAATTTAACGTAATCTTCTGAGAGGTGGCGGATTTCACGTTTCTTCTAATCCATGATTATCACATGACAAGATTCTTTTTCATTAACGTACGTAAAACGTACTACCTCTGACGTCAAGGAGCGCGACACGTGGGAATTCACGCGAGATTTCATCTCTCCGACCAATCCAACATGGCGCCGTAGGGACGTTGTTATTGTTCGGTCGCTTCTTCAAGCTCCTGTAGTACGACGAAAACTACGCAGAAAACGGCAGAGCGTGTTCATGTTGGCATGAGCGCAACAGCTGGGGATGATGATAAGATCCACCGGCTTCTTCCGAGGGATTGACTGCCCGTTTTACACGGAATACAGCGAGAGCAAAGGCAGCAGAAATGGGTGTAACAGACCGTACTGTCACTTCAGACACAGCCAGCAGAGACGGGCGTCCTACGGAGCACCAGCTGATGTTAAAAAGCAAAGAGACCTGCACTCCGCACAGAAAGAACAAGGTTATGATCCCTTCAACCCAGAAGTCGTGAGGCCCCAGGAGCAGCAGAATGGAAAGCCGGCTGCTTCGGGAGACCTTACTGGTGCTCTGGAGCTGGTCAACAAGGCCATCGAGGAGGTCCGCAGCGAGGtggagagggagaagaggaagCTCTCTCGGATTGGGGATGAACCGTACGATCCCAGCAAGAGTACAAAGTTGTCTACATCTGATGCTGTTAAAAGTAAACCGCCACCTTCACACATGGCCTATGACCCTGGGAGTTATCAGATGACCACTGGCGGTTATAATCCCACCCCTGGCTGCAGCAAGTATACCTTGGATTCAGACAACAAGGGGAACAATAGTAACTCAATGGAATATGTTCCTACTTCAGTGAGAAAGCCTCCGtctcggacacacacacatcaactcccctctcctccccccagTCCAAAGTACTCAAACAGCACATCCTCCTCTAAGTGTAAATACACTGTGGACAATTCAAAACCATCTACAGATATGGAGTATGACCCGCTGTCCAACTACTCGGCAGGAATCGCAGCGAAAAGCAAGAGGGACCGGGATGCACAAGCTGTTAAGACAGAGCAGAGAAACGCACACAAACAACCAGGATCAGCTATGTCAGAGTATGTTATAGCTGTGAAAAAACCACGGCAGCAGAGTGTAGACTCAAAAAAGTACACTTTCTCTGACTCTGATGGGGAGAGCTCTGGAACAGAGTATCGACCCACCTCGCTAAGCAATCTCCAGCAGAGAAAAGGCAAAAGTGGGTCGCTTTGGGATGCTGTGgggaaggagagaaaagaaaaaactgatAGCATGCTAAATGCACTGACACAGAGGAATACAGAGGACTTGGCAGGGGACTCGGACATCAAGGAAGATATTAAACAAAAGGACAGTTTAGAGAAAAAGAAGGTGGCTAGTCAAACTAGCCACAAAAAAATTGCCAAATCTGAGAAAGTGCATAAACTTGAAAAGGAAGCAAACAAAACGACTAGTAGTAAGagtggtagcagcagcagtaaagaCAAAGGATCAATAAAGAACTCAAACCAGGACTCTGCAAAGAAGGAGAACAAGAGTCATGGAAAAAGAGATGATAGGAAAATCGCAGTTAAGGTTAAGACACCTGATAAAGTTCAGAGGGAAGCCAGAGACGAAAAGAGAAGTGATGGTAAGATCAAAGCtgtggaaaaagtaaaaacagacTCAAGCAAACGAGATAAAGATACAGAAAATGGTGCAAGGGCAAGCAAGAAAAGCAAGATATCCGAGAAGGAAAAGGAACAAAGCAAGTATAAGGACCGGCAACACAAAAATGGTAAACTTGATAGCAGTAAAAGGGAAAAGGATACAAAGAAAATTTGTAAAAGTATTTCTAGTGGCGGGAGCAATAGCAATAACATTAAAGGGAGTTCTTCAAACAGTAAAGATAAGGTGAAGCAAAACGTCAGCTCATCCAATGGGAAAAGACTTAAGGACAAACGGCAAAGTCTTAGTCACGCTGATCTGTTTGGAGATGAGAGCCCAGAGGAGGTCGAACCAATAGTGGTGGATGATGACGGTGATGATGACTACGAATACGAGGAAGTGCTGGTGAGAAAATCTGCTGATGCTTTAAGGAGGGGACGTTTGAACAAGAGGAAAGCGTCGGAGCTGACTCCGTCTTCTTCTGACGATGAGGGTGATCGCGGTGTGGAGGGCAGCGGGGCAGGTAACGACGAGGTCGACGGTGTTGGAATCGACTTCTCTAGTTTCCAGGACGATTTGGACTTTGACTCAGATCCCATGGAGGAGTGTTTGCGGATCTTCAATGAATCCAAGGATGTGAAGATGGAAGACAAGGGAAGGCAAGCTAAACAGCCCTCCAGGGattcagaggaggagagaagcaCAGAGAGCGCATTAACCTCTCTCTTTCCCGGTCAAAAGAAGAGGGTCTCCCATTTTGTTGCCAAAGGAAGTAGTGACGCACCTTCTACGACTGTGGTGCGTCCGTACAAGAGACTCTCAGCCCAGGAGGTCTGCTACAAGCGTATGCAGATGGCACAGCAGCAAGCTGCTCAGCTTTCTGCTTCAGTCAAATCTGCCTCAAAGAGCTCCAGCCCCGGCTTCtctggagagaggaagagaatagCACACCGTCCCAGCCCACAGACAACATCCTCCAAAACAAGTCCTGCAGATGTTAAACCAGCTGCCAGTCGAGTGTTATCCCCCAGCCAGACCCATCAGACTGTCAAGGCCCAAACCACCGCTGGCATCTTGCCAAAGACCATGTCCACTGTCATGCAGAGGAGGGtagcacacacacccaccatgAAGAGTAGTTCAATGAAGCGCCCCATCATTCCCATTGAGTTTGGGGCCAAAGTTCCCAACAACGTCCGCCAGCGCTACCTTAACGCTTTCATAGATGAATGTGTCAAATTTTGCTCATCAGAGGACGTTGCCTTCCAGATGGCCCTTGACGAGGAGAAGCTGGTGTATGAGCGCAGCAGCAGTAAGAACATCTACCTCAATGTAGCTGTCAACACTCTGAAGAAGCTCCGCAGCAAGTGCAGCTCCTCTCCGTTGCCTGTCACCAAGGACCCGGGGTTAGTTGCTAAAAGGAGGGCCCAGTCCCACGAAGAAGTTCTGGGAGGTCGTCTTGCTGCAACAACCAGCTTCACTGTCAACAGGATGGGTAAACAGCAGGAGGAGAAACTCATTGGAGCTACACTGTACAGGAAGCTGCAGTCATACCTGATGACGGAAGAGCAGCTCCAGGAGCACGGCTACCCGAGAGCAAGCCCAGAGGCTGCCGGCAAAGCCGTCATTTACAACCTCCCCGAGAAAAAGGCCATCTCAGATCCGTTCAACAAGATATGCTGTCGATGTGGAGCGGAGTATAAGATCAATGCCAGTGGCAACTGTATACGAAAAGAGGAATGTATTTTCCACTGGGGACGATTGCGCAGGCATAAAGTCGCTGGAGGCTGGGAGACCAACTACAGCTGCTGTGCTGCGGCTGTTGGCGCTCCAGGCTGCCAAGTTTGCAAGCAACATGTTCAGGACGGGCGTAAAGAATCATTTGATGGCTATGTCACAACGTTCAGTAAAGCTCTATCACCAGATGGCAATGGAGGGGTGTTTGCTTTGGACTGTGAGATGTGTTACACAAAGCAGGGCCTGGAGCTGACGAGGGTGACGGTCATCGACTCTGAGTTGAAAGTCATCTACGATACGTTTGTCAAACCTGAAAGCAAAGTGGTCGATTACAACACACGATTTTCAGGTGTGACGGAGGAGGACTTGGAGAGCACCACCATCACTCTGAGAGATGTTCAGGCCGTGCTGCTCAGTATGTTCAGCGCTGAATCCATCCTCATAGGACACAGTCTGGAGAGTGACCTGCTTGCTCTGAAGcTAATCCACAGTTCCGTTGTAGACACAGCCATTGTGTTTCCTCACCGCCTCGGCTTGCCATACAAACGTGCCTTGAGGAACCTGATGTCCGACCACCTCAAACGCATCATCCAGGACAATGtggaggGCCACGACTCGAGCGAAGATGCATCTGCCTGTATGGAGCTGATGTTCTGGAAGATCAAGGAGGATGCAAAGGTCAAAAGATGACCTCAGACCCCTCTGCTACCCTTTCCACAGTTCAACTTCCTGCCTTCATGTCAGAGTCAGGGAGACAGAGAAGTTCAGGAGGCCTGCACATGCTCTCAGAGAGTTAAGGTCAGAGTGTCGGGTGGGTGAGAGGTGAGAGGGATGCTTCAGTGCAGTTGGAGGTTTGCTGTTGCTACCCACTGTACTGAATAGGAGAACTGCCAGTCCCTTCAAAGCAATAGGAGCCCAAATTAAAAGTGTTTTCATTTGCTTATTAGTATTTCAGTTCAAAATAATGTTAGTTAAAATGTTTATCTGTTTATTTTGAGCAGTATCTCTTTTAAGGCCTCAAACAATGTATGAATAAACCCTTTCTATAGAAGAACTTCTGAAAATAATGGGGCATTGTCCGCTGAACAATGATGATTAATATGATATTCATGCCAGGCTGTGTCTTCAGCCTAAATTGCACTATATAAACGCTCTGGTGTATAGGGCCCAAGTCTTGAGTACCTCATCTGTGTTATTAAAGCAATTGCTTCTAATGGATAACACGTTACCTGTTCTTAGTTACACTTAGTTACACTTAAGTGCATTGATGTGATAGTCTGTCAAACATTGCTATGTAAATGCACTTGTGTTTTTCCACATTGTTTTTTCACTCACTGACACTCTGTTTATCCAGTTCATTTTGTTCGTTGGCTCTCAAAACCTAACTAATCCTATAATACTTGATCGTATTAAAGATCCTCAGCAGAAATGTAAAGTATCTGCTTATCACCTATTTGGTATGGTTGATGGAATAAATCACTGTATTTTATAGTTACGACAAAATAGTGATACTATCTCcatgagtgtctctgtgtcatgTGCACTGTGCACTGTGACAGAAGGTATGACATGTTATTCCTCCATGCAGACAAAATTAGGTTCAGTATTGTTAAATTAGGCCTGGGTTATTAATCACAGACAATTATCATTTAGTTAATACCAGCTAACCTGTACTGTTTTATGTTGAAAATGACTGAAAGAATACTCGAGGGCTGTAAATAtgctgtttccttttgtatttcTTCAATTTTGGTTGTTTATCTTTTTCTATTAAAAGGTATTAGTTAAAAGAA

Function

GO: NA

KEGG:

id description
K14570 REX1, REXO1, RNH70; RNA exonuclease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128645 lncRNA upstream 22699 14368922 ~ 14369226 (+) True G95372
TU128557 lncRNA upstream 128039 14258285 ~ 14263886 (+) False LOC120565959
TU128745 lncRNA downstream 137114 14546536 ~ 14639046 (+) True G95447
TU128779 lncRNA downstream 279960 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA downstream 286260 14695682 ~ 14698562 (+) False LOC120565380
TU128781 lncRNA downstream 290128 14699550 ~ 14700145 (+) False LOC120565380
XR_005640293.1 lncRNA downstream 377646 14787068 ~ 14791606 (+) True LOC120565827
XM_039810169.1 mRNA upstream 3428 14374703 ~ 14388497 (+) True mknk2b
XM_039811954.1 mRNA upstream 23371 14362795 ~ 14368554 (+) True mob3a
XM_039811953.1 mRNA upstream 23371 14362795 ~ 14368554 (+) False mob3a
XM_039810216.1 mRNA upstream 30282 14345581 ~ 14361643 (+) False LOC120564948
XM_039811694.1 mRNA downstream 9118 14418540 ~ 14423102 (+) True zgc:101100
XM_039811695.1 mRNA downstream 9118 14418540 ~ 14423102 (+) False zgc:101100
XM_039810582.1 mRNA downstream 14797 14424219 ~ 14467288 (+) True csnk1g2b
XM_039810585.1 mRNA downstream 14797 14424219 ~ 14467288 (+) False csnk1g2b
XM_039810584.1 mRNA downstream 14797 14424219 ~ 14467288 (+) False csnk1g2b
XR_005640172.1 other upstream 1009181 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1171553 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1291480 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2947392 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 3143278 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 209936 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 400946 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 400946 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1911072 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3446215 17855637 ~ 17859152 (+) False nppc

Expression Profile