RNA id: XM_039810175.1


Basic Information

Item Value
RNA id XM_039810175.1
length 1697
RNA type mRNA
GC content 0.50
exon number 13
gene id matk
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22079192 ~ 22090850 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACAATGACAGCGCTCACTCCACAGCTGCAGTAAATGTCTGGGAAGTGAATATCGACAGTATCTGTTCCTGCTTAGTGGTTTTAAGGAAGAAATTGGAGAGAAAATGTCACCGACTGTATGAGACAAAGATGATTTCGAAGTCTTCTTCCTCCAGTTAACGAACCCAGCTGTCCTGAAGAGGAAACTGTTAACATCTGTCCAGAGAGCTGCAGGTGTTCAACACAGAATTCTCCAACCCTCCAGCCCTGCTAATGGCAAAGATGAGCTGGGCTGCCAGTACACAGTGTGTAGCCAAGGGGGACCACAGGAAACCAAAACCTGGAGAACTGACTTTCTACAAAGGAGACATCCTCACTATTGTAGACACAACCACGAAGAAGGGATATTACAAGGCCAGACACAACACCACCGGAGAGGAAGGACTCATAAACGCCTCCAATGTGCGTGAAAGAGAGGCTCTGCGTGTTGACCCCAGCCTCAGCCTCATGCCTTGGTTTCATGGGAAGATCTCGGGTCCTGACGCGGTGGGTAAGCTGCAGCCAGCCGAGGACGGCCTGTTCCTGGTTCGAGAGTCCATTCGCCATCCCGGCGACTACGTcctctgtgtcagtgtctcCGGAGATGTCGTCCATTACCGGGTCATTTATCAGGACAACAAGCTGACCATTGACAACACACAGTATTTCTACAACCTCATTGACATGATAGAGTTCTACTCAAAGAACAAAGGCTCCATTGCTACAACTCTTCTGAAGCCCAAACAAAAACAAGGAACCAAGTCAGCTGAGTTGGAGctgtctaaatCTGGATGGCTGCTGGACATTACGAAGCTCAAACTGGGAGATAATATTGGAGAGGGGGAGTTTGGTGCTGTTTATGAAGGAGACTATATGGGCCAGAGGGTGGCAGTAAAGACCATTAAATGTGACGTCACAGCTCAGGCCTTCCTGCAGGAGACCACAGTCATGACGAAGCTCCAGCATAAAAACCTGGTGCGATTGTTGGGAGTCATTCTTCACAAAGGCCTTCATATTGTCACAGAGCTCATGGCTAAGGGAAACCTTGTTAACTTTCTGAGGACAAGAGGACGTTCAGTTGTGAACTCAGTTCAGCTTCTCTGCTTTGCTCTTGATGTGTGTGAGGGGATGGAGTACCTGGAGTCCAAGAAGTTTGTTCACAGAGATTTGGCGGCTCGTAACGTGCTGGTCTCTGACGACAGCATGGCCAAGGTCAGCGACTTCGGCCTGACCAAGGTGGACTCAAAGGTGTCAGATAATGCCAAACTGCCGGTCAAATGGACCGCCCCCGAAGCTCTGAAGAAAGAGAAATTCTCCACAAAGTCAGATGTTTGGAGCTACGGTGTTCTTCTGTGGGAGATCTTCTCTTACGGTCGTCAACCTTACCCTAAGATGTCGCTGAAGGAGGTGAAGGAGATGGTGGAGGAGGGCTATCGCATGGAGGCTCCAGAGGACTGTCCCCCCAGTGTTTACTCACTGATGAGGATTTGCTGGGAGCAGGAGCCACGCAGAAGACCTACTTTTCACAAACTAAGAGAGAAACTTGAGCGAGAGATGGGTAAACGCAGCCCAGGCCCTGGGTCGGAGTGTCGGGATGGCAGCAGGTCTGGATCTAGATGCTGATCTTGGTTGTGAATCTTGAACTCACAACTGTGGGAATAGAGTGGCGGCTGATGGA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131159 lncRNA upstream 43518 22033797 ~ 22035674 (+) True G97190
XR_005640290.1 lncRNA upstream 71839 22005775 ~ 22007353 (+) True LOC120565815
TU131148 lncRNA upstream 81449 21997413 ~ 21997743 (+) True G97181
TU131132 lncRNA upstream 134631 21942965 ~ 21944561 (+) False G97170
TU131249 lncRNA downstream 539 22091389 ~ 22093374 (+) True G97263
TU131286 lncRNA downstream 65261 22156111 ~ 22157958 (+) True G97295
TU131289 lncRNA downstream 67207 22158057 ~ 22174393 (+) True G97297
TU131330 lncRNA downstream 222798 22313648 ~ 22316358 (+) True G97335
TU131333 lncRNA downstream 231642 22322492 ~ 22322855 (+) True G97338
XM_039810681.1 mRNA upstream 173 22053357 ~ 22079019 (+) True zfr2
XM_039812013.1 mRNA downstream 13119 22103969 ~ 22112923 (+) True rx1
XM_039812018.1 mRNA downstream 28144 22118994 ~ 22124092 (+) True LOC120565906
XM_039812020.1 mRNA downstream 28144 22118994 ~ 22124092 (+) False LOC120565906
XM_039812019.1 mRNA downstream 28144 22118994 ~ 22124092 (+) False LOC120565906
XM_039812021.1 mRNA downstream 28929 22119779 ~ 22124092 (+) False LOC120565906
TU131036 other upstream 297192 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2547515 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3293556 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4206781 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4207345 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 192796 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 394661 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 402107 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 481209 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 481619 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile