RNA id: XR_005640172.1


Basic Information

Item Value
RNA id XR_005640172.1
length 2567
RNA type transcript
GC content 0.45
exon number 3
gene id LOC120564964
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13379398 ~ 13382747 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATGCGGACAACTCCGTCATAGTGAGCCTGCTCCATAAAAATGACAGAGGCCATGGACCAATAATTGAAGACTTTGTCCAGTGGTGTGAGGAGTCACACCTTCAATTGAACATATCAAAAACAAAGGATATGTATATTGATTTCGGTAAAACTCTAGGATATGAGGCCATACCTATAAATGGTCAACTAGTGGATCAAGTAGAATCCTATAGATATCTAGGGACAATTATTGACTCTAAATTAAATTTCCAGGAGAATTGTGAAGCTGTCTGCAAAAAAGTACAACAGCGTCTATACTGCTTGAGAAAATTGTACCATTTTCATATAGACTGTTGTGGTTAGGACAGAATGGACCCAAACGCAGAGCTCAGCACAAGATACTTTATTGGGAAAATGGGAAAGAGGATGGGGAAGTGGGAAGGTGGATGCCAGGGAGGAGAGCACGGGCACGGGGGCTGGAGCTGggaacagagacacagagagactggGGCTGAGAGATCGACAGGGGAAGCACTAAAGCGCGGAATGGCGAGAGCTGGGGAAGGCTGGTGCAGGAACCGTGAGGGAGGGACTGGATGGAGGGGCCAGCTGACTGGAGGCTGGGTGACGGGAAAGGTAGCAACTGAAACAAGAAGACAAAAAACAGGTTACAAAAGCACAggcaggaacacacacaggctaGTATCTAGGAGCTTGAGGTATATGTCACCAATGAGACAGGAGCAACGATTAAGCGAAGATGGTGAGTCAAACCGGGGTTGATATACTGGGCTTGATTGAAGTTGATGACCGGCAGGTGTGTACGGCGGGAGGAGTGGTAGTGAGGAGGCGAGCAGGTGTGTGCAATCAGCTGGCTGGCACAggcaggaggggaggggggaaacagagagagacagagaggcagagccaACACAAACTGACAGCAAAATATATAAGagggaaaaaattaaaaacagacacTCACAGCCAGCCGGACTCCAACCATCACATAGACAAGACCACGATGACATTATTTTATCATGCGTTTATCGAATCCATCATATCTTTTTCCTTAGCGTCATGGTTTGGGTGTGTTTCAGTTAAGCACAAGAATCGCCTAAATCAAATTGTAAGATGGTCAAGTAAGCTGACTGGTGAGTCCCAGCGGCACCCCGCAGTCCCGTATGCTAAACAACTACAGCGGATAGCTATGGCCATCTTAGAAGATACACCCTTTGAATCTGGAATTCCAGTATCTCCCCTCTGGACGGAGGCTAATAGTCCCTGGTTGTAGAACTACAAGatttaaaaactgttttgtcCCAGCAGCAATCACTCTGTTAAACAAACTGTAGAATTACTTGCACACAACGCACAAGCACCTTGGTCATAGCTGTAGAATTTCTGCATATAACTGCACAAGTCAATGTGGTCATGTACTGTTTTTTATCCATGTTCTACTGtctgttttatatgttttaatgttttgtatgttgcaTGTTATGTGGTGGTTCAATGTTTTAAGGATGTCCTGCCTCTTAGACTGTAAACCTAGTTTACCTACGGGTACCAATAAagtaacctgaacctgaacctgctTTGTTCCATTACAATCTGACATTAGCCTACTGCTAACTAATAAGTAGCTGCATGTTAACGGCTGATAGCTGTATAATTTCTCCCCAATGTTGGGTGAcattactgctgggacatgtccggttgtgtaatggttggtttagaagcctttatttgtggtacaaagtcctgctatatactccgtTACAGTAGCTCCAGCTGCAACTAGTAAAACAAAAGCGGAGCGGAGATTCCAGGAAACACAGTGGGcgatcagagcagactgggctttctCGGGatgggggcttaaagagacaggcgctccaacAGTGCATCTCAGACAGAGGGGAATACAGGAGCCGCAGTCATGGGCAGTATGAGTTGCTATGGTTTCTGGTGCTGCCCTTGCCTTGCCTGCACAGTTTCAGAAAGATTTGGAGAGAACCGTTGTCTCCCATTATGTGACATATGCAGCCCTGCCATATTATCAGCCTTGGGGATACCTCTGTGTGTGGCGCCTCCTGCAGGCCTGTCCCTAAGGGCTGCCATGCGAAATAGATATGGTATCAAGGGTTCTCTCTGTAAGGACATCGCAGTTTCCTGTTTCTGCGGGTGGTGCAACTGGTGTCAGATGCATCGTGAGTTAAGACATCGTGAAAAAACTCCCACTGTCGTCAATGTTACAAACGTGAACGTGCAGCAGCCTGCTCCAATGATGATGACTCCTGTATACCAATATCAGTGAAAACCAAAGCTTGAGAGTATGATGATGAATAACTTTCAGTTTCTTATTTAGAGTCTAATAATTGTTGACTATCGCGTCAAATTATTTTCTGAAGTttctgtttaacccttgtgttgtctttttgtcgaccatgcaactttctgtttttctgggtcaaaatgaaaaaataaattcaactttttcattgtcttttttgacacttttgtcgctttcCCCGATGTATTTGAAGATGTTTCCGAtgtgttgtcactttttttatgtttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128278 lncRNA upstream 3730 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA upstream 5050 13372473 ~ 13374348 (+) False LOC120564967
TU128265 lncRNA upstream 37300 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA upstream 37300 13335734 ~ 13342098 (+) False LOC120565776
TU128185 lncRNA upstream 232603 13146305 ~ 13146795 (+) True G95040
TU128288 lncRNA downstream 8079 13390823 ~ 13399617 (+) False LOC120564965
TU128289 lncRNA downstream 17086 13399830 ~ 13400932 (+) True G95114
TU128315 lncRNA downstream 104292 13487036 ~ 13487366 (+) True G95139
TU128338 lncRNA downstream 127449 13510193 ~ 13514065 (+) True G95148
XR_005640289.1 lncRNA downstream 321623 13704367 ~ 13747072 (+) True LOC120565805
XM_039812047.1 mRNA upstream 10391 13367294 ~ 13369007 (+) True LOC120565922
XM_039812029.1 mRNA upstream 20273 13356372 ~ 13359125 (+) True LOC120565910
XM_039811793.1 mRNA upstream 37447 13335770 ~ 13341951 (+) True LOC120565776
XM_039810377.1 mRNA upstream 44300 13328617 ~ 13335098 (+) True LOC120565057
XM_039810378.1 mRNA upstream 44300 13328617 ~ 13335098 (+) False LOC120565057
XM_039810238.1 mRNA downstream 8085 13390829 ~ 13399744 (+) True LOC120564965
XM_039810412.1 mRNA downstream 30617 13413361 ~ 13415999 (+) True insl5a
XM_039811498.1 mRNA downstream 413350 13796094 ~ 13820008 (+) True swt1
XM_039811496.1 mRNA downstream 413469 13796213 ~ 13820008 (+) False swt1
XM_039811693.1 mRNA downstream 474290 13857034 ~ 13947979 (+) True hmcn1
TU128204 other upstream 159026 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 278953 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1934865 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2130751 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2431152 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU128764 other downstream 1236614 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1427624 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1427624 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2937750 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 4472893 17855637 ~ 17859152 (+) False nppc

Expression Profile