RNA id: XM_039810272.1


Basic Information

Item Value
RNA id XM_039810272.1
length 1483
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC120564991
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15720189 ~ 15723206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGCTGTTCAGCAGCacagaacagagagagacatcagAACCAGCATTCATACTGAAACAGCCGACAAAAAGATGAAGATGCCACAGCTTCTCATCCTCCTGATGACCATTTTGGTGCACGCAGCAACCGCTTTCCCCACGGACAGAAGAGCTCTGCTGAGCCAGGACAAACACGCCTCCTGGGACGACGTGAACGTGGTGGCTCACGGCCTCCTGCAGCTGGGCCAGGGTCTGAAGGAGCATGTGGACAAGACCAAAGCCCAGATGAGAGACATCAATGCCAAACTGAAGGCCTTCAACGGCACGGTGGCTGGCCTGCAGAGGAGGCAGCAGGAGCAAGATGAAGCTCTGAAGGCAAGAagcaaagaggaggaggaggagagggagaggctgGCCGAGGAGGTGAAGAGACAGAGCGAGGGCATCCACACCAGGATGGACAGGCTAGAGGAGAAGGTGGATGAGGTGCTTAACGAGCCGACACTGAAAAGCAACAACAGCGAAAACACAAGAGTCTCATTTATCCAGAGACTGGTAGCCGCTCAGAACAGACGCATTGACCAGCTGGTGGAGAAAATCACGCAGCAACAAGACAAACTGGAGAAACAGAGTCTGTACCTGCAAACCCTGCAGAGCAAGGTCGCACACAAGAGAGTAAAATCACACCGACGGAGAGATGAGGAGATGGCACTAATGGGTGAGCCAGCAGAGCACAGCAAAGACGCATCAGGTTTGGCCAGAGACTGTCACGACCTGTTTGTACGCGGGCAGCGAGCCAGCGGCGTCTACAGGATCCAACCAGAGAGCTCCCAGCCCTTTAACGTCCTCTGTGAAATGACTTCAGaAGGTGGATGGACAGTTATCCAGAAACGTCACGATGGATCCCAGAACTTCAACCAGCTGTGGGAAAGCTATAAGAAAGGCTTCGGCAACCTGAATGGTGAGTTTTGGTTGGGCTTGGAGAACATCCACTCTCTCTCCAAACAAGGCCAGTACGTCCTGCAGGTGGAGCTCTCCGATTGGGCAGGAGAGCAGCAACAGGAGGCTCGGTATCGACTCCAACTTGACGGAGAAGAGAAGAAGTTCGCTCTCCACCTGGAATCTTCATCTGGGgttcaggagaaaatactgACAACCGGAGAATCTGGTCTTCCTTTTTCCACAGCCGACAGAGACAATGACCTCGCTGCAGATGTCAACTGTGCTGAACTGCTCTCAGGTGGTTGGTGGTTCAGTAGCTGTGGTGAGTCAAACCTTAATGGTAAATATCCCAGAAGGCCGAGCTTGCTCAGGGGACAGCAGTTCAGAAGACAAGGGATGTTTTGGACGTCCACAAAGGGACAAAACAACTCTGTTAAGACCACTCTTCTGAAAATCGCACCCACCACAATAGAGCAATAAGCAGATCAGTCTGTATCAAACAGCAGAGGACCAAagaagacaaaaacatcaaactgTATTTAACTCAATTTCATGATCTCTG

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640275.1 lncRNA upstream 38428 15676410 ~ 15681761 (+) True LOC120565654
TU129130 lncRNA upstream 74145 15639752 ~ 15646044 (+) True G95735
TU129126 lncRNA upstream 84242 15634498 ~ 15635947 (+) True G95731
TU129124 lncRNA upstream 86621 15632913 ~ 15633568 (+) True G95729
TU129122 lncRNA upstream 87384 15628969 ~ 15632805 (+) False LOC120564959
TU129209 lncRNA downstream 12746 15735952 ~ 15738435 (+) True G95799
TU129215 lncRNA downstream 25204 15748410 ~ 15752090 (+) True G95804
TU129217 lncRNA downstream 43557 15766763 ~ 15767010 (+) True G95806
TU129238 lncRNA downstream 56659 15779865 ~ 15785647 (+) True G95814
TU129259 lncRNA downstream 91332 15814538 ~ 15821366 (+) True G95830
XM_039810232.1 mRNA upstream 87377 15523929 ~ 15632812 (+) True LOC120564959
XM_039810132.1 mRNA upstream 197784 15513151 ~ 15522405 (+) True LOC120564879
XM_039811900.1 mRNA upstream 207914 15506857 ~ 15512275 (+) True LOC120565844
XM_039812071.1 mRNA upstream 214968 15498026 ~ 15505221 (+) False mpv17l2
XM_039810903.1 mRNA downstream 48087 15771293 ~ 15775561 (+) True gamt
XM_039810159.1 mRNA downstream 165370 15888576 ~ 15896422 (+) False LOC120564897
XM_039810158.1 mRNA downstream 166848 15890054 ~ 15896422 (+) True LOC120564897
XM_039811038.1 mRNA downstream 267344 15990550 ~ 15994166 (+) True LOC120565334
XM_039812387.1 mRNA downstream 299371 16022577 ~ 16031978 (+) True tmem38a
XR_005640328.1 other upstream 803583 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 806156 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1098776 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2337445 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2499817 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 597288 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2132431 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2143342 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2145460 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2148504 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile