RNA id: XM_039810412.1


Basic Information

Item Value
RNA id XM_039810412.1
length 780
RNA type mRNA
GC content 0.47
exon number 2
gene id insl5a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13413361 ~ 13415999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATGCAGGCATTGGATCAAGAAAGAAGACTCAAAGACAGCCGGCAAGATAACAGATAACCAACCGAAAACAGGACAGAGCAGCTGAGGTAGTTTCAGGAACAAACCAGACCAACAAAGACATAAACCTCCGTCAGGTATCCAGCATGCGTGCTCTGGTGGTTTTGCCTCTGCTGTTGTGTGCAGTGGTGTGCGCGGTCCAGGTGAGAGCAGAGGTGAAGGCAGTGAAGCTATGCGGTCGAGAGTTCCTGAGGGCCGTCGTTTACACCTGCGGGGGCTCCCGTTGGAGGAGAGTCCTCAGTGAGTCAGACATGGACGGTTTGCCCACAGGAGAGCAGGGCAGTTTGGAGAGCCTGAGCGGCAGCACCCCGGGCTCCGAGTTGACCAAACGGGATATGAATAACATGCTGACCACCTTGTGCTGCCAGGTGGGTTGCAGGAAGAGCGACCTCACCTTCCTCTGCTGAGGACAACctcccctcttcttcttcctgtcTCCAAAATGACTCCGCTCTCTCCTGTCTCGCCTTAGTAGAAAGCAAATCTGAAACAAAATACTGATGTTTCAAAACAATAACATCACTGTATTGTATGTATAACAAGGCTCATATCCACACTTTAAGTGAttgcttttaatatttttttgtgagTTATTACTTTACCTTGTAAGGTTTGTAGATGTGAATGTGGACCATGTTtgtaaacatgtttctgaacACGAGATGGAAGGCATGTGCAACCAtaagaatatattttattataataaactTATGGACAGATA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128289 lncRNA upstream 12429 13399830 ~ 13400932 (+) True G95114
TU128288 lncRNA upstream 13744 13390823 ~ 13399617 (+) False LOC120564965
TU128278 lncRNA upstream 37693 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA upstream 39013 13372473 ~ 13374348 (+) False LOC120564967
TU128265 lncRNA upstream 71263 13335734 ~ 13342098 (+) False LOC120565776
TU128315 lncRNA downstream 71037 13487036 ~ 13487366 (+) True G95139
TU128338 lncRNA downstream 94194 13510193 ~ 13514065 (+) True G95148
XR_005640289.1 lncRNA downstream 288368 13704367 ~ 13747072 (+) True LOC120565805
TU128368 lncRNA downstream 406854 13822853 ~ 13825269 (+) True G95173
TU128371 lncRNA downstream 406854 13822853 ~ 13824088 (+) False G95173
XM_039810238.1 mRNA upstream 13617 13390829 ~ 13399744 (+) True LOC120564965
XM_039810237.1 mRNA upstream 30614 13379398 ~ 13382747 (+) False LOC120564964
XM_039812047.1 mRNA upstream 44354 13367294 ~ 13369007 (+) True LOC120565922
XM_039812029.1 mRNA upstream 54236 13356372 ~ 13359125 (+) True LOC120565910
XM_039811793.1 mRNA upstream 71410 13335770 ~ 13341951 (+) True LOC120565776
XM_039811498.1 mRNA downstream 380095 13796094 ~ 13820008 (+) True swt1
XM_039811496.1 mRNA downstream 380214 13796213 ~ 13820008 (+) False swt1
XM_039811693.1 mRNA downstream 441035 13857034 ~ 13947979 (+) True hmcn1
XM_039811906.1 mRNA downstream 579496 13995495 ~ 13999954 (+) True ptgs2b
XM_039811908.1 mRNA downstream 608756 14024755 ~ 14028859 (+) True pdcb
XR_005640172.1 other upstream 30617 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 192989 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 312916 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1968828 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2164714 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 1203359 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1394369 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1394369 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2904495 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 4439638 17855637 ~ 17859152 (+) False nppc

Expression Profile