RNA id: XM_039810522.1


Basic Information

Item Value
RNA id XM_039810522.1
length 7345
RNA type mRNA
GC content 0.53
exon number 52
gene id tprb
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14034257 ~ 14065550 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGGCACTGCTGCTGCAAGAGTTGGAAGGTTCCGAGATATCTAAGCTAccaaaaacaattcaaaacaaactCGATAAGATTTTTTCGGATCAGCAGTATGAAATCGATTATTTGAAAGCACAACAGGAACAATTTCGTGTTGACAGCGAGCAACACTTCtttgaaaaagttaaacaaCTTGCCCAGTGTCAGGAAGAATTTGTGTCCCAGACTCAAGAACATCTTAAACTGAAAGAGGAGTTTACTAAGCAAGAGGAGGATCTTAAAAGTGTGCGTAGGAAAAACAAGGAATATGAATCCGCACAAGAAAGGCTGTCATCAGAGCAGACTTTGCTGTCAAAAGCCAAAGAGGAACTGGAGGCAGAAAAGCGAGAACTTGTGCGAACACTTGAAAGGAGATCCTTGGAAGTGGAGCATTTAAATGATGACTTCCGGCAACTCAATGATAAATTGGTGGAGGTCAACACCTCTAAGATGGCCCTGCAGATGAAATTGGATGAGCTTGAATCAGCTGAAGTCAACATAAAATACAAGGAGAAGCGCATGGAACAAGAGAAGGAGCTGCTGAATGGCCAAACATCTTGGCTGAACGAGGAGTTGAAGGCTAAGAGTGAGGAACTACTGTCCTTGTCCCGACAGAAGGGAAACGAGATCCTGGAACTGAAGTGCAACCTCGAGAACAAGGAAGACGAGGTGAACAGACTCCAAGACCAAGTGGCCAGTTTGAAGACTTCAAGTGAACACCTTCAGAAACAGAATGAGGACATGATCAGCAAACTAAaagaaGCCAAGGAACAACAAGCTACCATGGAGGAAAAGTTCAGAAACGAGCTGAATGCCAACATTAAACTTTCCAATCTATACAagGGAGCAGCAGCAGATTCTGAGGCAAAAAGTGAAGAGCTGAGTGGGGCAGTGGAGGAGCTGCATAAGCTGCTGAAGGATGCTGGAGAAGCAAACAAGGCCCTTGAGGAGAATTTGCAGGAGATGAACGGTGCCACAGACAAAAGTGTTGCTGAGCTAAAGGAGAGGATCCAGGGTCTCGAGAAAGAGCTGGACAATGCCAATGAGCTGCTATCAAGTTCTAAACTTAGAGGCCCTACTGGTACATCTGTGCTCACAGAAGAGCAAATGACAACCATGTCTCCAACAGCAGCTGCTGTATCCAAGATAAAGCCCGGGATGAAGCTGACGGAGTTGTATAGTGCATATGTAGAGAGCCAGGAGCAGTTGCAGCTGGAGCGATTGGAGAATAAGCGGGTCAACAAGTACCTGGATGACATTGTGCAGGAAGTGGAAGCAAAAGCCCCTATCCTCAAACGGCAGAGGGATGAACATGAGCGCTTGCAGAAGTCAGTGGCCAGTCTTTCTGCCAAGCTGGAGCAGGCTGTTAAGGAGGTGCACCGTCTGCAAAAGGAGGCTGATGAAGCTAACAAGCGCTCCTCTGTTCTGGAAAGGGACAACCAGAGGTGTGAACTGCAGCTGGGAGACATGGCTCAGCAGGTGCGCGTGCTGCTGATAGAGCTGGAAGAGGCTCGTGGAAACCATGTGGTtcatgaggaggaggtgagcTCAGCCGACATCAGCAGCACATCAGAGGTGATCAGCCAACACTTGGTGACCTTCCGTGGTGTAGAGGAGCTGCAGAAGCAGAATCAGCGTCTTCTGGTGGCCCTTAGGGAGCTCAGTGATGCCCAGGAGAAAGAGGAGTTTGAGGCCACTGGCAACAAACGTGGTGAACTGGAGAAGAGTTTGGAGAAAGCCAAGATTGAGCTGGAGTCCCTGAAGGAGCAGCGCGAGCAACAGATTAAGATGACTGAGTCCATCGTAAGGCAGAGGGACATGTACCGCATGCTGCTTGCTCAGGCAACCGGAGTCAGCTTCCCTCAACAAGGTACACCACCTGAAGAGTTCTCCCTGGCCTCCACCCCCCGACGCTCACCTGCAGCCATTCCCACCCCAGGAACTCCCACTGCACTTGTCTCCATGGCAACAGAGTCTGCTGAAGCCTTGGAGGCCAAGGCAGCTTTGCGACAGTTGCAGGAGGTGTTCTCCACCTATAAGAAGGAGCATATGGAGAGTACCAAGGCACTGACAGAGCAGAACGAGAAGCTTCAGGATCAGATCTCTGACCTTCATTCACAGAATGCCAAGATATCCACCCAGCTAGAGTTTGCCTCAAAGAGGTATGAGATGCTGCAGGACAACGTTGAGCGCTACAGGAAAGAGATTGCTTCCCtcagagaaaaaggacagaATATGGCCACTGCCTCACAGAAGCAAGAGCAGACCATCCACACTTTGAATGAGGATCTGAAAGCTGCCAAAGAGAAACTTACCATGGCTGAGGGCCATGCTGAGACCCTGCGTAAGGAGAGAGACATGCTGAAGCTAGTGGAGTCCAGGCTGAATCAGGAGAAAGAGTCCATCATGAGCCAACAACAGAGCCAGAGCCTGCTGCTGACCAACCTCCAGGCCATTCAGGCCACTCTTGAGCGTTCAGAGACTGATACACGTCAGCGTCTAAACAGCCAGTTGGAGAAGCAGGAACGAGAGATCTCCCAGCTGCAGAAGAGGCTGGAGCATGAGGTGGAACAGCGCCACCTGCTCAGCAGAAACCAGGAAATCCAGTTGCTGGAGGCAAAGAGGCAGCTTGAGCTACAGCTACCATTACACCAGAAGACCAAGGAGCTGCTGAATGCTGCTGAGTTGGAGCTTAACACACTCCGGCTGCAGCTAGGCAGCAACGAAGCACGTCACACCCTGAGCTCCCCCACCACGTCCATTATCAGAGGCCTGCCGGGTTCAGATCAAGACAGAGAGGACCTACAGTGCCGCCTGCGGCTGGCTGAAACCCGGGCAGAAGAGCTGGCAGAGAGCCTCAGGGCAGCCACCTCCAGCATGGAGCAGTACAGAGCCATGGCTCAGAGCCTGGAGGAGTCCCTGGATAAAGAGAAACAGGTAACGGAGCAGGTACGCTCATCCATTGAAGCTCGTATAAAGGAGGCTGAGAAGCAGCACCGTAGGCTGGAGGAGAAGCTTCTGGaagcagagaaagacaaagacaattTAGAGGAACAGAAGAGGAGAGCCCTGGCCTCTCTGGAGGAACAGaTGAACAGTCTAAGGAACAGTCTGAGCAGTGCCCAGGCAGATCACCAGGCGGTGCTACAGCAACTGGCAGTAGCTGAAGCCCAGCAGCAGCAAGCTCTACAAGACAGCCAGGAGCAAGCTAAGATGGCAGCCGAAGCACAAGATAAGTATGAGCGGGAGATGATGCTGCATGCAGCAGATGTGGAAGCCCTGCAGGCTGCTAAGGCTCAGGCCCTGCAGGCTGTTGGGCTCAGACACCAGCTGGATGAGAGAGCCCAGAGGGTCAGCGCTGAGCTACTGGAGGCCAGGGTCTCCTGGGGGGAGCAGGAGAAGATCATCAAGGAGGAGATGTCGAAGATGGAGAGCCGCCATGAGGAGTTGCAGAGGCAGAACACCCTCCTGCATGAGCAGATCCAGACGATGAGCAGCAAGATGGCTGACAAGTTGCAACATGCTGCCAGTGAGAGTCCCATGAACATCTCCCTGACTGAGGAGGGCAAATCTCAAGACCAAGTCCTTGAGATTCTCAGGTTTGTGCGACGGGAGAAGGAGATTGCAGAGTCTCGTTTTGAGATTGCCCAAGGGGAGAGTTTGCGTTATCGTCTGAGGGTGGAGCACCTGGAACGCGAACTGAAGGAGATGCAGGACAGCTTGAGTGCTGCAAAGGAGAGGATGCAGGTGACAGCAAAGACCTTGTCTCAGCATGATGAGCTGATGAAGAAGACGGAAACTATGAGCATCCTGGTGGAGACCAACAAGATgctgagagaggagaaggaCAAGATGGAGCAAGAACTGCAGCAAACCCAAGCAAAGGTACAAAAGCTGGAGTCAGACATCATGCCACTGCAGCAGGCCAACTCTGAGCTGAGTGAGAAGAGCGGCATGCTGCAGGCGGAGAAGAAGTTATTGGAAGAGGAGATCAAGCGCTGGAAAGCTCGGACCCAGCATTTGGTGACCCAGCAAAAAGATTCTGATCCGGAGAAGGAGGCCCATCTCAAACGCATTCTGCAGCTCACTGAGGACGGTACCAAACTTAAAGCGGAGGTTCTCAGGAGCAATAATCTAACGGCATCTCTGCAAAGCCAGATACAGAACTTGCGTGAAAATGTTAGTAAGATAACTGATGAGAGGAATACTCTGAAGAAGGAAGTGGAGACCAAGAACCAGGAACTCCAGGAGAAGGGGCGAACTATTACCCAGGTCAAGAAGATTGGACGCCGCTACAAGACTCAGTATGATGAACTCAAGGTGGAACACGACAAGTTGGTAGCCGAGGCTGCAGCAGGTCCATCCCAAGAGGAGGAGGCTCGTCAAGCCTCGGTTCAGGAGCTGCAGAGCCTCAGAGATTCTCTGAACCAGGCCGAAGCAAAGACCAGAGAGCTGGAAGGACAGCTGGAGAACCTCAACAAGGTTGTTACAGAGCGTGAGACTGAAGGGCGTAATGCCCAGGAACAGTCCTCCAGGCTGCAGGCAGAGCTGACCAGGCTGAGGCAGGAGCTGCAGGATAAAGCTTCTCAGGAGGACACGCTGAGACAGCAGATGActgagaaggaggagaagaccAGGAAGGCCATTGTTTATGCCAAGCAGAAGATCAACCAGCTCATGAGCTCCAAAGACCAGTTGCAGAAGGAAAATGAGGAGCTAAAGCAGCAGCGTGAGGAGCTGGAGGTGCGGGTGAGCGCTCTCAAGTCTCAATACGAGGGCCGCCTGAGTCGACAGGAGAGAGAACTGCGAGACCTGCGAGGCCAACAAGAGAGACAAGAGCAGAGAGACGAGCCACCTGAGGCAGGTCCCAGCAAGACCCAGGAACAGCAGAGGAGCACAGAACAGAGACAGATCAGTCTGAAGACGACCCCAGCGGCAGACAGGGGCAGtgCCAGCACATCTGAGCCTCCAACTGCCAACATTAAGCCAACACCTGTGGCTACAGGCAGTAAGCAGCCTGTCAATCCGGGGAACAAACCCACTCCTAGAGCAAGCATCAGGCCAATGATTACCCCAGCTACTGTACCCACCCCAACACCCACAGCTACTGTCATGCCTACCACACAGGTGGAGACCCAGGAAGCTATGCAGTCTACTGAAGGCCCACCAGTGGAGCATGTCACTGTGTACGGCAGTGCCAGCGGCTCGGTGCGGTCCGCCAGTCCCAACGTCCAGACCACTTTAGCAAGCCCCATGCTGAATGTGCAGCAGACCCAGACACAGGCCACAGCATTTGTCCAACCCACTCAGCAACAGAGCATGACCCATGCAGAACCAGCTAATCAGGAGCCATCACCTGTGGTCATTGAGGCAACCCCTAGCTCGCAGGTGGAATGGCCTTCAACGTCCTCCACTTCTTCTGTGTTTGGGACTGTTTCAGCAACACCAGGTACCTCCTCCATGTCCAAGAGGCCtcgagaggaggaggaaagcgTCACCATGGTCACTGACACAGAGTCCACCCAGGAGGATACGTCCAGGGCTCCTATACCTAAGAAGCTGCGCATCATCCAAAGAGTGGGTCCAGAGGAGGAGGTGCTGGTGGAGGACAGTGCTGAGGCTGAGGGGGTGGTACCAACAGACAGTCAAGACGGTGCAGAAACAAGCCAGACACAGGAGTTTCCAGTACTGGAGGAAGGAGATGAGGGTGCAACCTCCCAGTCTGTCACGATGGACCAAGAGGTTACCCTGACCCAAAGTGACACATCTGAACCGCTGCAGCACGAAGTGATCGTCATAGTAACAGACACAGAGAGTGAGGATgaacaggaagaggaggatgaagaggaagaagatCAGGACTacgatgaggaggaggaagaggaagaagaggaggaggaagatgaagaggatgaggaggatgacGACGGAGAGAtgggggaggaaggagaggacagTAACGAGGGGAGCGGAGACGGCAACGAGGCTTACGAAGGAGACGACACAGAGGGAGCTGATGTAACAGACCCgggcacagagacagaggagagttTGGGGGCGTCTGACTCCACCCAGAGGCCAGCAGATTCCCAGACACACAGCTTCGAGGGCAGTACAATGGAGACGTACTCCACAGAACAACCTATCACAAGTTCTGGTACACGGATGCCCCAGTCACCACGGAGACCAACACATCAGCTGCCCCCTCGCCTGAACATTGCCCCGACATCAGAACTGGGACCACCTGCTCAGGTTCAGCGTATGCCTGTTCGTCGTCAGTCAGTGGGCAGAGTCCCTCAGCTCACTCCCGGGGTGCCGGGCAGTTCTcacttctttgatgatgatgacaggATGGTTCCCAGCACTCCCACTCTGGTGCCACACCGCTCAGATGGTTTTGACCAGGCCATTCATTTTCCCCAAGTGGCCGGTGTGCCTCGCTTCAGGTTTGGTCCCTCAGACGACATGCCACAGACCACTTCCTCCTTGCACTCTGACCTGGGACAGCTCGCATCACAAGGAGGTCTTGGGATGTATGAAAGCCCCTTGTTCCTAGCAACTCACGAAGAGGAGTCTGGCGGACGCAGCGTTCCCACCACACCGTCACAAGTTGCAGCACCAGTAACAATCTTCTCAGAGGTGGCACAGTCTGACACCGCTGAGCACTCCTCCCAGTCGGTTCCCATGGTGAGCACGTCCACACCAGGCCTGCCAGCAGCAGCCGCTACAGGGGAGGATAGAGACGACGTCTTCCTGGAGCCAGACACTGATAGGTCCAGCGGAGAAGTGTCAGTAGATCCAGTGGTCTCGCAGGGAGATATAGAGGAGCCAGGCCAGCAATATGACAAGGCCAACCTTCCCTCCACCAGCCAGGAGCCCTCCTCTAGCTCTGCAGGTCACTTAGGTCCTCTGACCAGTCACTTCTGGTCGTCCCTTGGGCTCGGCAGAAGCTCTGGGGCGACCACGCCTTCTCAGTTGCGGGCCGCAGTCTGCGGAACAAACTGCCCCATCACATCAGATCTGCCCCCTCTACTGAGTCGTTCAAAGCACCGCTCAAGGCCCACCTCTTTCCTTTGGCATTTGAATatACAAGCAGTGCTCCACCTAAACCCTCTAGACTTGGACACAGCAGACAGCTGCAGCGCTGGCCAGAACACCGTGGCGGCCGCATGAAGAGAGGAGGTCAGGGATTTCCTTCTCGAGGTGTGCATGGGAGACGATTTGCGAGATAAAGCACTCGTCTCGACAACGATGACTTGTCATTCccatcagaaacacattttccaATCAGCGTTTGCAGATTCTGTATTCAACCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128475 lncRNA upstream 63128 13968931 ~ 13971139 (+) True G95239
TU128472 lncRNA upstream 79383 13953149 ~ 13954884 (+) True G95236
TU128378 lncRNA upstream 199009 13830850 ~ 13835258 (+) True G95179
TU128376 lncRNA upstream 205786 13825457 ~ 13828481 (+) True G95177
TU128371 lncRNA upstream 210179 13822853 ~ 13824088 (+) False G95173
TU128529 lncRNA downstream 79455 14145005 ~ 14145318 (+) True G95287
TU128539 lncRNA downstream 140789 14206339 ~ 14208562 (+) True G95297
TU128541 lncRNA downstream 155021 14220571 ~ 14222594 (+) True G95299
TU128557 lncRNA downstream 192735 14258285 ~ 14263886 (+) False LOC120565959
TU128558 lncRNA downstream 192735 14258285 ~ 14263886 (+) True LOC120565959
XM_039811908.1 mRNA upstream 5408 14024755 ~ 14028859 (+) True pdcb
XM_039811907.1 mRNA upstream 5408 14024756 ~ 14028859 (+) False pdcb
XM_039811906.1 mRNA upstream 34313 13995495 ~ 13999954 (+) True ptgs2b
XM_039811693.1 mRNA upstream 86288 13857034 ~ 13947979 (+) True hmcn1
XM_039811496.1 mRNA upstream 214259 13796213 ~ 13820008 (+) False swt1
XM_039811643.1 mRNA downstream 16006 14081556 ~ 14144941 (+) True fcho1
XM_039810666.1 mRNA downstream 108169 14173719 ~ 14203364 (+) True acsbg2
XM_039810665.1 mRNA downstream 113462 14179012 ~ 14203364 (+) False acsbg2
XM_039810667.1 mRNA downstream 113462 14179012 ~ 14203364 (+) False acsbg2
XM_039810217.1 mRNA downstream 280031 14345581 ~ 14361643 (+) True LOC120564948
XR_005640172.1 other upstream 651523 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 813895 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 933822 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2589734 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2785620 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 553808 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 744818 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 744818 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2254944 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3790087 17855637 ~ 17859152 (+) False nppc

Expression Profile