RNA id: XM_039810587.1


Basic Information

Item Value
RNA id XM_039810587.1
length 2051
RNA type mRNA
GC content 0.51
exon number 9
gene id si:ch73-61d6.3
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14480454 ~ 14498574 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGGGCCTCATCACCGCGGACAGGCGGGACAAAGCACTTGTTCAGAGGCTGTTTGTCGAAGCAAACCGTTGTCTCTATCTTCGCCTCGGACTGCAGCTTAAAGCGGAGTCGCTACTTTTAAAGATAGCCTCGAATGAAGAGGttcactttaatattaattcatCTCGGAGACAGGTTAGTTTTCTAACGGACACATTATTTAGCTCCTAACTTTCAGAAGGGGAGTTTTGACAGGAAACAGGGATTGGCTGGAAGTTCCTATTCCCCTTTAGCGTTCCACAGTACGGGATATCTTTGAGCGATGTTCGACAAGCAGCACTATGAGAGTCCACCTGTTTACTCTCCTCCTTTCCGCTCGCCATCCAACAATGGCTTTGGCCCTCCAGGCAGCTTCAATGCTCCTCAGAGCGGTTACAACGCATACCCACCTCCGCCGGGATCTTACTACATTGAGGACAAACCTCAGCACTTCTACAAATGGCTGTCACCTCCAGGGATCATCAAGGCCATGATGGCTACAGTGATCGTGTTGTGTGTGGCGATTTTTGCCTGCGTGGCCTCCACTCTCATGTGGGACATGCAGTATGGAATGGGAATGGGAATGGGCTACGGCAGTGGATACGGCGGCGGCAGCTACGGCTCAGGATACGGTGGTTATGGAGGTTATGGAGGAGGCTACGGAGGAGGCTATGGAAATGGCTATGGCTCCTACCTCTCTCCTTACTCAGCCAAAACCACCATGATTGCCATGGCAGCCATTAACTTCATAGGGGCACTGGCCTTCTTCATCACAAGCTTCTCTAAATCCAACACTGTCCGTGGTAGAAAGTTCTTCCTGGCCGTCATGATAGCCAGCATCATCATGGCAATCCTGCAGGGCATCATAAACATTGTCTACATTGTCGGGGTGAACCCCATGTCCCAGGGCACCTCCAGTATGATGTACAATCCGATGCTTATGATGTGCCAGAACCTCTACCAGACCAGCTACTCTCAGATGGGAGGAGTGGGAGGCTTCCCCATCTACAACCAGTACCTCTACCATTACTGCTTTGTGGACCCACAGGAGGGAGTTGCCATGGTGTGTGGATTCGTGGTTGTCATCGCCTTCGGTGTTGCGGCTttctttgcacacaaaacaagaGGGAAGATCTGGCGATACGGGAAACCAAACATCTACTGGGAAGAGCCTCTCGTTGGTGGGAAGGCCTCAGAGGGCAGGGACGTAGAGGAATGGGTGAACAATGTAGAGGAAAGCCGCAGTGTTCAAGACGCCCCTACCCTGCTGGTATCAGAGAAGGGAGCCGGGCTGCTCAACGCCTCAGCGAACAGTGTCATCTCCTACCCCCCAGCTAAGGTGGACAGCAGCTCCTATAACGAGGACAACTATGACAACAATGAGTACTCAGATAGAACCACCAGCAGACCATCAGAAGCCTTCTCCCACGGTGGACGAACCAGCTCGAGCCCTTCAGAGGGGACCGGCGGGGGCCGCAAACCCTCTGCCAACAGGGGCAAGAGACGCAGACGTAACCCAGAGCTGGATGAGTCTCAGTATGAGACAGAGTACACCACAGGAGGAGAAACAGGCAATGAACTCGATGGAGAAGAGTGGGAGAAtatGTACCCAGAAATAACATCTGATGCTCAGCGTCATGACTATAAGAGAGAGTTTGATGCCGACCTTAAGGAATACAAGCGCCTGTGTGCTGAGATGGACGACATTAATGACCAGTTAAACAAACTCAGCCGTCAGCTGGACACACTGGATGAAAACTCTGCCAAATATCAGGCTGTAGCAGTGGAATATAATCAGTTGAAGGATCTGAAGCAGACATCGGACTACCAATCTAAGAAGAAACAGTGTCGCAGCCTGAGACACAAACTGTTCCACATCAAGGGCATGGTGAAGGACTACGACAAGAACCACTGATGAATCCGCTGAGTCCTGACGCTCAACTCTGTGGTCCACACAGcaaacactcacagacacacaggccaAGATACACTCCTAAACACTGCAAAGACTCTGTGACATGCCGAGACCAAa

Function

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128645 lncRNA upstream 111228 14368922 ~ 14369226 (+) True G95372
TU128557 lncRNA upstream 216568 14258285 ~ 14263886 (+) False LOC120565959
TU128745 lncRNA downstream 47962 14546536 ~ 14639046 (+) True G95447
TU128779 lncRNA downstream 190808 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA downstream 197108 14695682 ~ 14698562 (+) False LOC120565380
TU128781 lncRNA downstream 200976 14699550 ~ 14700145 (+) False LOC120565380
XR_005640293.1 lncRNA downstream 288494 14787068 ~ 14791606 (+) True LOC120565827
XM_039810580.1 mRNA upstream 1387 14469044 ~ 14479067 (+) True mfsd12b
XM_039810581.1 mRNA upstream 1387 14469044 ~ 14479067 (+) False mfsd12b
XM_039810582.1 mRNA upstream 13166 14424219 ~ 14467288 (+) True csnk1g2b
XM_039812080.1 mRNA downstream 39002 14537576 ~ 14544528 (+) True babam1
XM_039812472.1 mRNA downstream 50015 14548589 ~ 14554920 (+) True plvapb
XM_039810569.1 mRNA downstream 80453 14579027 ~ 14619203 (+) True ano8b
XM_039810568.1 mRNA downstream 92954 14591528 ~ 14619203 (+) False ano8b
XM_039810570.1 mRNA downstream 92954 14591528 ~ 14619203 (+) False ano8b
XR_005640172.1 other upstream 1097710 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1260082 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1380009 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 3035921 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 3231807 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 120784 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 311794 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 311794 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1821920 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3357063 17855637 ~ 17859152 (+) False nppc

Expression Profile