RNA id: XM_039810652.1


Basic Information

Item Value
RNA id XM_039810652.1
length 3506
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC120565175
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21539227 ~ 21552254 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccgGTGTTAATACgtcaccggtgccttaacaaccgttatctaccggaccgaatagcaactcGGATTTCGTTGCCTTATTTTGCctccgcttctctctgatgctccgaaaacggggatgatgatgtgtcacctttttcagcccttctgttTATAGACCAACAGAACTAATTAAGATCAAGAAATCAAGAAAACAAACTGCAGATTAAGTggttcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacatgcaAGAGGCTGCTTTGCTCCCTGCATCTTTTAAGGTCGGATCTTGAGGGTCTCTGCTGTTATATGaatatgaaatatgaataaGACATCAATGTTTTAACAGTTAGGTCTGCTCTGGAGCTCGAAAAACTCTCACATGAACTGTTCTCCTCTCCTCAGGATGGAGGCCCTGTTAAATGAGTGGCTTTGGCGGGAGGAGTACTGGCTTCCTCCTGGCATCCGCTGGCAGGACATTGAGATGAAGGAAGACGAGGGTCGCTTCCCTCTACCCAGGGATCTCATCTACACCTTGCCACTGGCCTTCGCCTTTATAGCCTTCAGAATTGTCTTTGAGAGGCTCATCGCCGTCCCATTAAGCAAACATTTTGATGTGAAGGACCGGATTAGGATTCAAGCCGCTTCCATCCCAAAGCTGGAGACCTTCTACAAACAGAACAGTGCGCAACCATCGCAAAGTGAGGTGGTGAGCTTGTGTAAGCAATGTGGACTTTCCCAGAGAAAGATCCAGACCTGGTTCAGACGCAGAAGGCACCAGGACCGACCCAGCAACACCAAAAAGTTCTGCGAGGCCTCCTGGCGTTTTGTCTTTTACCTCGTATCGTTCACTGCGGGGCTCGGCTCTTTAATTAATACTCCGTGGTTCTGGGATCACAGAGAGTGTTGGAGGGGTTATCCCAAGCAGCCCGTGGCCGAGGCTCATTACTGGTATTACATCTTGGAAATGGGCTTCTATTTGTCGCTGCTTCTGTGCGTCTCTGTGGACATCAAGCGAAAAGACTTCAAGGAGCAGGTCATTCATCACATCGCCACCATATTCCTCATCGGTTTCTCCTACTGTGCCAACTATGTGAGGGTTGGCACTCTGGTGATGCTGGTGCACGATTCTTCTGACTTCCTTCTCGAGTCTGCCAAGATGCTTCACTATGCTGGCTGGACGAAGACGTGCGACTCACTGTTTGTCATCTTCTCTCTGGTCTTCCTGGTGACGAGGCTGGTGGTGTTTCCTTGCAGAGTGGTCCACACAACCTTGGTGGTGTCTGTAGAATTCTTCCAGCCCTTCTTTGGTTATTATTTCTTCAACGCCCTTCTGTTAGTGCTGCAAGCATTGCACATCTTCTGGGCTAATCTCATCCTGCGCATGGTCTACAAATTTGTGTTCCTGGGCAAGGTGGAGCGTGATGAACGCAGCGATGAGGAAAGTGAGgtggatgatgaagaggaggagcctgaggaagaagaggatgagTGCAGCTGGGAGCAAAGAAAGGTTGCAATCAACTCCAAACTGGCATCGCtggctaacaactgtgtcctgAACAACCTGACCAACCAGAGGAATATAAACAGCAGACTGCCCAAAGCCAGATAGTGGAGCAACCTCGTTATGCGTCGACCGAGCCTTTCCAGAAGATTGTATTATTTACCCTTTCCGCCTATTGGTGATTAACTCATTTCTGACATATGATACATCCACATGGCTTGTGTACATCCCACGGAGTCCACTGATGATTTCAGACAAGGGTTGGTCTGCATCCTGCTTATCTTCAAAAAAAGAAGGTGAAGAAGCACAGAtgaagaaacgccatcattaCTGTCACCCATACCACTGCATACTGATAAAATATATATGGCAAAACAAGGAGTGAAATTTCCTGAACAACAAATCATATGTTTTtgcatattttgtattaatgctGTTTCTTTTCATTGTATTATAATAACTAGTTTGTAAATACATAAGGATACAATTTCCTGACCTGTGCTATAATGCATTTATCCTTTCTTTGGTCAACAAGGAAAACtaaatgtgttttacacaaaatcaaactgttctatctaaaataatatgttttaaaCAGAGCGAAGCTAGAATCTAATAGTAATTCACTCTCCCAGCTTTGCATCCACATACACAATACAGTATGGTTGATTGAACATAGACTATCAAAGAATATTGATCGTAGTAAATCTGTTGATAAACCACTTCATATATCTAACAGGTCAATTTTATGTTGTTGCAACTTGTGACAGAATCTAAATGGCTACTGCAGAAGTCCCATAAAGTTGTATTTTTCTGTGATAGGATTTGATTTAGGTCTAAGCTCACGTCTTAGCAGAGATATGGTGCCCCCTGGTGCAAAAATAAGAATGTATCGTTGTAGAGAAAGCACTCTCCGTGTCTGATAAAAATGAtgcctttacaaaaaaaaatgactgctCCTAAAAATAAGGACCTAAACCACatttatgtgagtgtgtgttgtgtttgtttttctactTTGAATAACATGTTACCATGTAGGCAGCATGATTTCTCAATGAGGTCTTTTGGTTAAGGTTTGCTGAACTGGACTTTATTTTTGTGCTTTGGCTGATGTTTTTACACTATTCTGTGATAAACACTTAATATTAAGCTCTGTGTGTAAGTAGGATTGCCATCACTGGACAGGTTTTACTGTGACGAATTTTAATGTTTAGCTTGAAATGTTGGTGAGGCAGCGGCTGGTACATAGTACCTAGTGCACACAGATGGGCATTAGAGAAATGTGAGATATTTTAGATAGCAGAACAATCTACAAAGGTCAAATGCTTTATAGCTCAGATGAAATGTAAGCAGATGAAATGTAAGGATTTGATGATTTTTATAAAAGATGGCATATTTTGATATCACTAGACCAGACTGCTAGGAACAAGAGGTCACTTGGATTTTAACATGTATTTTAACACAGCGAAAGATGTGGCTCAGTGTCTGTAAAGTGTTTCCAGGCTAGGCTCTAGATAGTGCATCATTATTGTCAACAGTACAGCACAGAGATCTTGTTCAGAAACCATCAAACTACAGTACACTCATACACAGTATTCACTACCCAAAACTGGTGTTAGGTTAGTGAGAGCAACTCTTCAAGATAAGTGGTTAGAGTAgaaatgtgtctgtctctgaacGGGGACTTAACAGCACTGGGGCCCACACATGATCAAGTTATAGAGCACTAAAAGTGCTGATCCACTATATAACGCGCCATGACCTCCACTAGAATattgttttataaataaaagaaaatagatatAAAACCAGGAGCAATGTCACGTTTCCACAAAAGTAACACTTGACTGTTCTCTTATGACTGCACACGGATGCATTATTGATTGAGTGGCCAGTTGGAAAGTTTTAATAAATTACTTCTATTGAATAAATTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130923 lncRNA upstream 83399 21368118 ~ 21456800 (+) True G97009
TU130941 lncRNA upstream 100804 21411363 ~ 21439395 (+) False LOC120565275
TU130926 lncRNA upstream 166666 21372941 ~ 21373533 (+) True G97011
TU130868 lncRNA upstream 225679 21310912 ~ 21314520 (+) True G96963
TU130765 lncRNA upstream 365892 21127063 ~ 21174307 (+) False G96906
TU130979 lncRNA downstream 2699 21554953 ~ 21557731 (+) True lsm7
TU130980 lncRNA downstream 2699 21554953 ~ 21557731 (+) False lsm7
TU131003 lncRNA downstream 106296 21658550 ~ 21676349 (+) True G97064
TU131004 lncRNA downstream 106296 21658550 ~ 21676349 (+) False G97064
TU131039 lncRNA downstream 191159 21743413 ~ 21744681 (+) True G97096
XM_039810912.1 mRNA upstream 98641 21411336 ~ 21441558 (+) True LOC120565275
XM_039810911.1 mRNA upstream 98641 21411336 ~ 21441558 (+) False LOC120565275
XM_039810556.1 mRNA upstream 147685 21384522 ~ 21392514 (+) True timm44
XM_039810555.1 mRNA upstream 147685 21384539 ~ 21392514 (+) False timm44
XM_039810554.1 mRNA upstream 155995 21377466 ~ 21384204 (+) False hnrnpm
XM_039810655.1 mRNA downstream 2640 21554894 ~ 21557726 (+) False lsm7
XM_039810656.1 mRNA downstream 6949 21559203 ~ 21571799 (+) True tmprss9
XM_039811756.1 mRNA downstream 25140 21577394 ~ 21580844 (+) False enc3
XM_039811757.1 mRNA downstream 26731 21578985 ~ 21592150 (+) True enc3
XM_039810145.1 mRNA downstream 298788 21851042 ~ 21853412 (+) True s1pr4
TU130185 other upstream 2008522 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 2754563 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 3667788 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 3668352 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 3671397 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 138643 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 731392 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 933257 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 940703 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 1019805 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile