RNA id: XM_039810683.1


Basic Information

Item Value
RNA id XM_039810683.1
length 4660
RNA type mRNA
GC content 0.49
exon number 19
gene id zfr2
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22053357 ~ 22079019 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCAGTTTCAGGGTTTCACTGCTGTCTGCCAGTACTAGGTACTATGACCTCTTTGACTGTACTGTGCTGGAGATGCCAAGATGGCTGCAAGCAATTATTTCGGCTTCACACATGGTGCCGGTCCGCAATACAGTACCCAGCCTCCCCCGGCCTACTCCCATCCCTCCACAGCCACTTACAGTGTCCAGCAGGCTCCAGCTGTGGCTCATGCAGTGACTGCATCCTACTCTCCAGCTCCAGTCCAGGCAGCCCGGCCAGTGGTCACTGCCCCTTACCCTGCCTATCAGAGTCACCAGGCTCCCCCTGACTACGCCTACAGGCAGCCAGACCCCCCGGCACCCCCACAGCCAACCACCACCCCACAGACGTACCAGCAGGACAACTACAGCTACGGGCGCCCTGCAGCTGTCACGACCTATGACAACAAACAGTACTACCAGACGAGTATAGCTTCAGCTCAGAGGACACCCACAGAGAATTACTACCAGACGGTAGGTGTAAAGAGTGCTTACAGTCCAGCCCCCTCCACTGTGTACAGCCAGCCTCCTCCTCCCCAGAGGCAGGTAACAGCCCTGAAGCCTCTGGCCCCCACTGTGtcaaccagctacaacatttACCCAGTGTCCACCAGTGTCCAGCAGCCCCCCACACCCATTTCATCCTACACCCTTGGCTCCTCCTTCGGATCCACTGTTTCAGCCACCACCTACTCAGGCATTAGCTACTCCAATTATGACTCAACTGGCTACACCTCTACATCCACCCCCTCCTATTACCAGCCGGCCCAGCAGACTCTCACCCAGCCACAGCCTCCACCTCAGCAGCCCCAGCAACAGCCCCAGCCCCCCATCCAGCCACCACCTAAGCAGCTGACAAGCTCTTCCTGGAGCAACTCAGGCAGCAACATGGTGACAGCTCCGACTGTAAACACCTACAAAAAGCCCACGTTTCACCAGAGCAAGCTGCAGAAGCCCAAAGGGCCTCCCAAGCAGCCCCAGCTCCATTACTGTGACATTTGCAAGATCAGCTGTGCAGGCCCTCAGACGTACCGGGAGCACCTTGAGGGCCAGAAGCATAAGAAAAAGGAGGCAGCCCTTAAATCTGGGGGGCAAACGGGGGCCAGCAATGGGCCCAGAGGTGTCCAGACTCAGTTACGCTGTGAGCTATGTGATGTCACCTGCACCGGAGTGGACGCCTATGCCGCCCATATCCGTGGGGCCAAACATCAGAAGGTGGTGAAACTTCACACCAAGCTCGGCAAACCTATACCTTCCACTGAGCCAGTGTTGGTGAATTCAGCTCCAGTTATCACAACCTCGACCGCTGGGAAACCTCCAGTCACCACATCCACTCCTGCCTCTGTCTCAACCACTTCAACTCCCACTGTGACATCCAAACATGGGGCTGTAAACACCCCGGTCAAAATAACGGCACCAGTCAAGAAACCAGCTCCTCccaaaatatataacatttCCAATAAGCTTGTCAGCGCTCCAGCAGCTGCAGTGACAGCCGCAGTGGTGGTGGCTGCCAAGGTGGAGGAGCCCATGCAACAGTCAGTTCAGAGGAGGGACCCTCAGAGTGACGATGAGGACGGTGACAGAGCCGGAGGCCAGGGAGACATCCAGCCAGTGGGACACGACTACGTAGAGGAGgTCCGAAACGTTGACGGCAAAGTAATTAGATTCCACTGTAAACTGTGTGAGTGCAGCTTCAACGACCCCAACGCTAAAGACATGCACCTGAAAGGAAGAAGGCACAGACTCCAATACAAGAAGAAAGTGAACCCAGAGCTTCCTGTGGAGATCAAGCCCAGTAACCGGGCTAGGAAGCTGCAGGAGAGCAAGCTGAAGAAGCAGAAACAGAAGGCGGTgctgaagagacagagagacgatGAGCAGTGCTGGCACATGGAGATGAGGTCAGACTCATGGCCAAAGCGATATGAGGAGGACTTGTACtggaggaggatggaggaggagcagATGTATTGGGGGGATCAGAGACGCAGGATGGCTCCTCCACCGTTGATGAGCCGCCCTGGTATGCCAGTACCCCCTCTACTGACGTGTGTGCGTCGGCCAGACTCTCCTGACGACCGTCACATCATGGCTAAACACTCAACCATTTACCCAGTAGAGGAAGAGCTGCAGGCTGTTCAGAGGATTGTCTCCCACTCTGAGAGAGCCCTAAAACTGGTGTCCGACTCCCTGCTGGAGAAGGAGACACCAGCTGTTGATACGGCTGCTACTGAAGGAGGAGATGAAAAAGGTACGGAGAACTCAGGACGGCTGTTAAAAGGTGTGATGAGGGTGGGCATCCTGGCCAAAGGCCTGCTGCTTCATGGGGACAGAAATGTTGAGCTCATCCTGCTGACTGCTAAGAAACCCACCATCTCTTTACTGAAGAACATCGCCAAGCATTTGCCCAAAGAACTGGAGACATTTTCTGAAGATCAGTATGAGGTGCAGGCTCACCCTGAGGAGGCGAACATCGTGATATTTTCAAGCAAGGAGCCCAAAATGCAGGTGACCATTTCTCTCACTTCGCCGCTGATGAGGGAGGACCCTGCTACTGAGaaggagaagcaggcaggaggaAAAGCGGCTGAGAAAGGTGTGGCTGAGAAGGACCCCACTGATCTTCTGAATAAGAGAAAATGTCTGGAATACCTGGCTGCTCTCCGTCACGCCAAATGGTTTCAGGCTCGTGCCAACGGGCTGCAGTCTTGTGTGATCATCATTCGGTTGCTGAGAGATTTATGTCAGCGCGTTCCCACCTGGGGGAAGATGCCCGGCTGGGCGATGGAGCTGCTGGTGGAGAAAGTGATCAGCAGTGCTCCAGGCCCGCTCAGCCCAGGAGAGGCCATGCGCAGAGTCCTAGAGTGCATCTCCACAGGCATCCTGCTTCCAGATGGACCAGGGTTGATGGACCCCTGTGAGAAAGAGACAACAGATGCTTTGGGAAGCATGATGCTTcaagccagagaggacattactGCCAGTGCACAGCATGCTCTGCGGCTGCTTGCTTTTCGCCAGATCCACAAGGTTCTGGGCATGGAGTCTCTGCCAGCATCCAAGGCCAGCGCTCGCAACCGCAAGCGTCGACGGGACGGCAGCGAAACGGGcgaaggggagggggagggcAAAAAAGACAAGAAGGAAGAAGTAGAGAGTGCTTGACCTCTGCCTCCAGAGTGTAGGCCTTTGCTTGTTGGTAGACTGGTAGAATGTCACAACTTTTCTTATCTTGAAAACAATCTTAACACGCAGCTATACACATATGAATATAACTGACTGTACATGTTACATGTCTACCCTTGAATTAAGAGGAGTAATGTGTTCGGGGGAGAAAACAGAAGCATAAGAATCTGTACTGCAAATCCTTCTCGTATAGTAATTTCCCGCTGATTAAGTGTCTTTTAAAGTTTGCAGAGAAAATTGGCTTCATCATGAAAATGAATGATTGCATCATTCCATTTCAGTATAATTGCACACTACTACTGACCACTCCCCTCTTCTTGTTTATTCCCAATAGTTAAACCACCATCAACTACAGTATTGTTTTATAAGATGTTGAAAAGCCTCCAGTTAAATCATCAGCACctaagaaagtttttttttttttccaagtagGACTGCTTGAGTCAGGACTCGCTGAACTAACGTTGGTGCATGACATTTGTACgctaaaatgtttttcagtctgtgttcaacaaacaaaaagatatGGGTTCTGGTTTAGAAGCTTTGAAACTGAAAAAGATGACAGATTACGGTTTAAGATCTACAAACATAATGCACTGTGATGTTCATTGTGCCTAAGGTGAGGAACATTAGACCTAAACTAGTGTGAAGGTCCTTCCTGAACTAAACACTCCCTCTAaagtctcctgtttcaacatttCCTCCTCATGCATTTTGAAATTGTTATACATTTGAGTTGTGAAATTCAAAGGTCCTGCATCACACCTTAAATACTTAAAATGAATTCCCCTTGAAAACACGTCAGTAAGGTTTTGTGAGAAATGTACAAAGAGAGATTCTCTGTTTTGTGAGGTTTTTCTGTGGAGGTCACTGGAAAGTAAATCTGTCTATAGAGGAGAGAGAAGTCTTATGTTGCACAGTCTGAAGCATGCTGAGGGAATGAAGCACTTAAGAAATGACAATGTTACTGTATGCAGCCATAATTTTATCATTTGAATAATATCCCTggtaaccttttttttcttccagagtATGGTTAGCAGAAGAGAGAAGCTTTAGTCCGACTGAATCTCTATTGTTATGATCATGTAGTCCTTTGACTTTCTTCCTTGTGCCTGCATCATGTTGTGTATTACAGAGTAAgggttacattgttttttttcaggttAATATTGTAATGAAATTGTTTCACAAAGATGTAGGACAGGGAAGGGACAGTTGCACAACTCTTTGGCTTAAAAGTTGATGTGATGAGAGCATTATTGTGCCGTTTTTAGTTTGATTTTCATTTATCAAGAGCATCATATAttgcttattttatttctgaagGATGTTGCAATCTATTTTGTATTCTTTAAATGGAAAGTGTGAACGTTGCTGTCCTTATATGTGAATGTCTTTGTAGTGTTGCCTAAAATTAGGggaaatatattaaaacacGTTTAAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131159 lncRNA upstream 17683 22033797 ~ 22035674 (+) True G97190
XR_005640290.1 lncRNA upstream 46004 22005775 ~ 22007353 (+) True LOC120565815
TU131148 lncRNA upstream 55614 21997413 ~ 21997743 (+) True G97181
TU131132 lncRNA upstream 108796 21942965 ~ 21944561 (+) False G97170
TU131249 lncRNA downstream 12370 22091389 ~ 22093374 (+) True G97263
TU131286 lncRNA downstream 77092 22156111 ~ 22157958 (+) True G97295
TU131289 lncRNA downstream 79038 22158057 ~ 22174393 (+) True G97297
TU131330 lncRNA downstream 234629 22313648 ~ 22316358 (+) True G97335
TU131333 lncRNA downstream 243473 22322492 ~ 22322855 (+) True G97338
XM_039811780.1 mRNA upstream 50698 22000197 ~ 22002659 (+) True LOC120565766
XM_039811779.1 mRNA upstream 50698 22000197 ~ 22002659 (+) False LOC120565766
XM_039811778.1 mRNA upstream 53260 21997919 ~ 22000097 (+) True LOC120565765
XM_039811631.1 mRNA upstream 73799 21967192 ~ 21979558 (+) True LOC120565695
XM_039811910.1 mRNA upstream 90809 21946181 ~ 21962548 (+) True tnfaip8l1
XM_039810176.1 mRNA downstream 173 22079192 ~ 22090850 (+) True matk
XM_039810175.1 mRNA downstream 173 22079192 ~ 22090850 (+) False matk
XM_039810177.1 mRNA downstream 173 22079192 ~ 22090850 (+) False matk
XM_039812013.1 mRNA downstream 24950 22103969 ~ 22112923 (+) True rx1
XM_039812018.1 mRNA downstream 39975 22118994 ~ 22124092 (+) True LOC120565906
TU131036 other upstream 271357 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2521680 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3267721 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4180946 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4181510 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 204627 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 406492 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 413938 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 493040 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 493450 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile