RNA id: XM_039810841.1


Basic Information

Item Value
RNA id XM_039810841.1
length 3701
RNA type mRNA
GC content 0.42
exon number 4
gene id htr2b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19044010 ~ 19051968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCACGGGCAAGACGGATTGGAGGGAGGGGAAGAGTGAGAGAGCGGACAAGACGGGAGAGAGTGCGGGCTGATCACAGGCTGTGAACAAGAGGCAGTGAGTGGGAGAGAGGCAGATGAGCCACAACATCTGAAAGTTTTAAACCTGTGATCGCGGTTGGTGATGCGAAGAAAGACTGGGGGTTACTCCAACATGTGgaagcaaaacaaattccacatcATGGACTGcttcagacagagacagatttAGGTTTTACCGCTGGGGGAGGGCATTATCTGTCATATTCTTATTTGGAGAGGATGGAAATATAAAAGGTAGGGGACTATTATTGAGATATTACActaagaggtgtgcaaaaattGAAATGCATTGGGCGTTAAGCTGCACTTTTCTGTGTTTACGCAAGTTGAGACGTAGCGGCTTGGAAAAAAATACTCGAGTTGAAACGTCAACAAGGATGTTAAATGTACACCTTCAGGAGCAGGGCACAAGGGATGAAGCATCCTGTGCATTGACCCTGAGCTTTCCTGCCCTACCCTGTGTCCTTGCCTGTGGGACGCAGTGACCATGCTAAGGCCTGCTGTAACATCTGCAGCACAATGTCTCAAGCTGTTGTGGCTCCACTCGAGGCTAACAACTCACAGTCAGGAGAAGCACCTGAGGCTCAGCTGAAATGGGCTGCCCTGCTCATTGTTATGGTCATCATTCCCACTATTGGAGGAAACATCCTGGTCATTCTTGCTGTGTCACTTGAAAGAAAGCTGCAAAACGCTACCAACTACTTCCTGATGTCGCTTGCTGTTGCTGATCTGTTGGTGGGACTCCTAGTAATGCCCATTGCCCTCGTCACTGTTCTCTACAACTCAGGCTGGCCTCTTCCGGATCCACTCTGCCCCATTTGGCTGTTCCTCGATGTGCTGTTTTCCACAGCATCTATCATGCACCTATGCGCCATTTCACTGGATCGCTACATTGCCATAAAGAAGCCAATCCAACACAGCCAGTACAAATCCAGAGCCAAAGCGATGGTGAAGATTGCACTGGTGTGGCTCATATCCATTTGTATCGCAATCCCTATTCCAATTAAGGGGCTTAAAAACTACCATCTTCCCAACAACGTCACCTTCAACAGCAACCACACATGCATGCTGAAAACAGACACCTTTTGGGAGTTTATCATGTTTGGCTCCTTGGCGGCATTCTTCATCCCTCTGACCATCATGATGGTCATCTACCTACTTACTGTCCGGGTGTTGCGCAAAAAGGTTTATTTGCTCAGGTCAAAGGTGACTCAGCGCTTTAGCTACCCGACAGTCTCCACAGTTTTTCAAAGAGAACAGGCTGCGACTCCACCTCAAACTGATCAACTTAACATGCTGGACAGCACACTTCCCAGGATGCAAGAAAAACCATATGTAGGCACAACAAACTCTCCTACAGGAGATGAAATGTCCTTTCGGAGAATGTCAACAATGGGCAAGAAGTCAATGCAGACTCTGAGCAATGAGCAGCGTGCCTCAAAGGTGCTAGGCATCGTCTTCCTCCTGTTCGTAGTCATGTGGTGCCCTTTCTTCATCACTAATATCACCTCTGTGCTATGCACAAGCTGTGATGTTCATGTAATCGCCCGCCTGATGGAGATTTTTGTTTGGGTGGGTTATGTGTCATCAGGCATCAACCCGTTGGTCTACACCCTATTCAACAAAACTTTCAGGCAAGCGTTCACGCGTTACATCACCTGCAATTACGAAACCTCTGCTAGTCATGGGCCAGGAAGGCACTCAAGGGCATCAAATGCAGATCGGACCCTTACACGGATTTCATTCAGATCTTCCATGGCAGAAAACTCTAAACTGTTCATGAAGCGGGGAATGAAGAATGGCATTGGAGCAGTTGGCTACCAAAGTCCACTGAGGTGCCGACAAGCATCTGTACAGTCATCTGGTGGTGTTTTGTTAGACACAATGCTTCTGACTGAAAACGAAGCTGGTAAGCAGGCAGAACATGTTAGCTGTGTATAGAGATACCAGACAAttgaatcaaataaaaaaataaaaataaataaaaaataaaaaaggtagcAATTGAAATGGATCAAAATCATGGTGCAAACTTTTTATCTCTTTAAAGATAAAGGCTAGCCCAcaacaaatattcaaaatgCATCATTCTGAATCAGCGGTTACTCTCAATTTGATTACCAAATAATTTAACGCCAGTGTCAACTGTACACTACataacaacacaatgtaacctGCTGCTGTCTGGTTTGTCGACAtcagtaaagttttttttaacaaaagcaaAATAAGGAAATATTTTCAATTATGCTCATTTTGGAAACACAAATTTAATCCATAAGTCAAACTCTATTATACCTGAATATATATTTCTCACTGGGTCTTTAAGACAGGCCATATTAATAATGTGAAGACAGTCAGTTCATAGTGTACCAGAAGAGAGTTTGAGTTTTCAAACGTTATAAAACCTTGAGATGACCTGTAACAGGTcgactaaaaaaacaaaagcggATGTCCTCTACGAAAGGTCTAAAGTCGACAAAGTTCAAGCCACCAAACAAAAATGTAAGGAATGAAGACATAATGATAACCTGGAAACCCTCTGTGAATGCAGAATACAATATATTCCTATGCAGATTCTTTTAACTTGGGCTATCTTAATATGATGTAAACCATCTCAGACCACATGCTTATATTTTGTAAGACAAACACAACTCTACCTTTCAAATCTTTTCTGCAACGGACACATAAAATACATTGCACTCTTGAAATGATACTAATTGTATTTGCTGGACCTTTGAGAATCACTCCTCTTGTATGTGTATTGCAGCttgatgtttttattatagaAAACTAAAtgtgttcaataaaaaaaaagaaaaaaaagttggttGCTGAACTGAAAACACTGCACTAGTTCAGAGTACATATGTTCTCTTACTGTCTACACCTTTATGCCACTTTGTCATCAGCAGGTAAAAAAAATTTTCTTCCCTTTTCATGAAACGGCGTTGACCGAAGCACAACAGGACAGCCAAATAAACTGTGTAAATTAGGCAGCCTCAAAAGATCAGCAAATACCAGAATAGTACAGTACGCTGTGTAAGCACTATTTCTTTTTACAGTCCCTTAATGCATACAACAGCTGTTTGTAGCATTGTACTACAGACATCCAAACACATAATAGTTTAATCAGTCTAAATTAAACCTAGTTAACAAAACATATGGAACAGTTTTCGATCAATGTGGCAACAAAAATGAGATCTGGATAAGGTTCCACGAGCTTGTAGGAGTTTGGAATGTGCCAGGGTTTTATTATTGCCTAGACCAACGCGGTCTCATTGTTAACGAACAGAAACTCTGTTGATTTTGTAAGAATAGTAAAGACTTAGGACATTTGAACTTAAAACGCTTCTTCTTGTGTGCTAGTGTACATGTTGGGGGAGTGAAGGGAGTTATTCTTGAACCATTAGGAAGTTGGAGAACAGGAGGACAACAGAATTGTTCTGGTTCAGCAGTTTTTCTAAACCCAGTGAAGATTTACACAaagtgtatttattattattaaagcttAAAATGTACACCCTGATATCTGTGCACTGGCTAGGCACTCTGTTTTACACTGTTCTGGTCTCTAATGGGTAAATTCAGTTGGTCTGGGAGTGATGAATCCCTATAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130082 lncRNA upstream 14546 19024283 ~ 19029464 (+) True G96438
TU130057 lncRNA upstream 184089 18782194 ~ 18859921 (+) True G96417
TU130032 lncRNA upstream 292149 18749120 ~ 18751861 (+) True G96399
TU130030 lncRNA upstream 299153 18744516 ~ 18744857 (+) True G96398
TU129984 lncRNA upstream 378897 18664577 ~ 18665113 (+) False nmur1a
TU130094 lncRNA downstream 4373 19056341 ~ 19057812 (+) True G96445
TU130108 lncRNA downstream 227501 19279469 ~ 19287673 (+) True G96455
TU130147 lncRNA downstream 279724 19331692 ~ 19387203 (+) True G96488
TU130149 lncRNA downstream 282208 19334176 ~ 19334915 (+) True G96489
XR_005640283.1 lncRNA downstream 335264 19387232 ~ 19510810 (+) False LOC120565771
XM_039810607.1 mRNA upstream 39729 18950200 ~ 19004281 (+) False LOC120565155
XM_039811429.1 mRNA downstream 286898 19338866 ~ 19341056 (+) True fam43a
XM_039811787.1 mRNA downstream 468974 19520942 ~ 19529494 (+) False LOC120565772
XM_039811788.1 mRNA downstream 468977 19520945 ~ 19529494 (+) True LOC120565772
XM_039811789.1 mRNA downstream 468977 19520945 ~ 19529494 (+) False LOC120565772
XM_039811659.1 mRNA downstream 522887 19574855 ~ 19586645 (+) True cth
TU130059 other upstream 258374 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 1171599 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 1172163 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 1175208 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 1177329 17866548 ~ 17866681 (+) True LOC120566215
TU130185 other downstream 478799 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 2638929 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3231678 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3433543 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 3440989 22492957 ~ 22501015 (+) False soat1

Expression Profile