RNA id: XM_039810958.1


Basic Information

Item Value
RNA id XM_039810958.1
length 2742
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC120565295
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7868591 ~ 7873986 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTATCTGGCTCTCTAGTTTGCTGAACATGTAGCTAGTTTACAGCTAACGGGTGAGAAGCAACTACTTACCGTTATTTGTTAAGCTCGGATTTAACGTTGTTTTACTGCTCTAGAAGGGAAGCATACTTCTAATGTATTAGAAGTTATACAATTTACTTGCGACAGAGTTGTCACATTCATTTTTAGTTAGTTTATGTGGCGTCATTAGTATAACACTCGCTGAAAGGAATGAATGTGACAGCGGTTACCTGCTAGCATAGCTAACATCAACTTTGGCtaataccgttagctagcttgtCTGGCTGGCATTTGCACAACACGGTTCTGTACAGTGGTCACCTCTAATGAGCAGGTAACAACAAACAAGGTGGCCTTGGGATTTCGGCTACGTCACCCGAAAATAGAGATGAGCTGTCAGGGTGATCACACCCCTCCATTGAGGGTGTTGGTGACCGGAGGATCCGGCTTGGTGGGCAGGGCTATACAGCATGTGGTCAAAGAGGAGAGGGGAGCCAAGGAAGGGGAAGAATGGATATTTCTCTCCTCCAAAGATGCCAACCTCACGAACGTGGAGGAGACACGGGCAGTGTTTGAAAAATATCGGCCGACCCACGTCATTCATCTGGCTGCTATGGTTGGGGGGCTTTTCAAGAACATGAAGTACAACCTGGACTTTTGGAGAAACAATGTCTACATCAACGATAACGTGCTGCAGGCAGCACATGAAGTTGGCGCGGTCAAGGTTGTTTCCTGCCTGTCCACCTGCATCTTTCCTGATAAAACCACCTACCCTATCAACGAGACCATGATCCATAACGGACCACCTCATGAGTCGAACTTCGGCTATGCCTATGCAAAGAGAATGATTGATGTTCACAACAGGGCGTATTTCCAGCAGCATGGGAGTTGCTATACAGCTGTGATTCCCACTAATGTGTTTGGTCCCCATGACAACTTCAGCATTGAGGACGGTCATGTGCTGCCAGGCCTAATTCACAAAGCTTACATTGCTCAAAAGGAGGGGAAGCCCCTGGTGGTCTGGGGCTCCGGCACTCCCAGAAGACAGTTCATCTACTCTTTAGACCTGGCTCGTCTCTTCCTGTGGGTCTTGAGAGAGTATTCAGAGGTCGATCCAATCATTCTCTCTGTTGGAGAGGAGGATGAAGTGTCCATCAAAGAAGCTGCAGAAGCAGTTGTGCAAGCACTGGACTTTAAAGGAGAAGTGGTGTTTGATACCAGTAAAGCAGACGGCCAGTTCAAAAAGACAGCCAGCAATGCAAAGCTGCACCGCTACCTGCCGGACTTCACCTTCACACCCTTCAAACAAGCTTTAAAGGAAACCTGTGAATGGTTTGTTGCCAACTATGACGCAGCCAGGAAGTGAACGCTCTGCCAATCAATTTGGTACAAAGTCTGTCGATCATTGACCCGCTCTGttggaagaggagaagaaaacaaGGTGGCTCATGTGCAAAGGTAGATGGATGTGACTGAATTGTGTGTTCTCAGTGAGCTAGACTAAatatactcagcaaaaaaaaagaaacgccctgtcactttcaactgcttttatattttaaacaaacttaacatatgcaaatatttgTATGCACATTAAAAGATCGAACAACTAAGACATAAACTGAACAATTTTCACAGACAGGTGACTGACAGAAATGGAATAATGTCCCTGAGCAAATTGGGGGggggtcaaaatcaaaagtagccctcagtatctggtgtggccaccagctgcattaagtactgcagtgcatctcctcctcatgcACTGCACCAGACTAGCcagttctttctttttttaagattatttttggggggcttttccctttattttgaaagtggatatagatgaaaggggggagagatatgggggacgacacgcagcaaagggcagcaggtcggattcaaaccctgcgccgctgcaggactcagccgaCATGGTAGcgaacactcttactgggtgagctagaggtcgccccagaCTGGCCAGTTCTTGCGGTTGTTGACGATCAGCTGTGCTTCCTGTCTCCCTGTAGCCCTGTCTTAGGCGTCTCACAGTAGGGACATTGCAATGTATTGCCCTGGCCACATCTGCTGTCCACATGCCTCAGGCACGTTCACGCAGATTAGCAGGGACCCTGGGCATCTTTCTGTTGGTGTATTTCAGAGTCAGTAGAAGTCTCTTTACTTTCCTAATTTTCTTATAACTGACCTTAATTGCCTACCACCTGCAAGCTGTTATTGGCTTTTCAACCGCTCAACAGGTGCATGTTCATTAGTTGTTTAGTTCATCGAACAAGCatggaaaacattgtttaaacccTTTACAATGTAGATCTCTAAAGTTAtgatttttacaaaagtatctttaaaatagtgtcctgaaaaaggggcgtttcttttttttgctgagtttcTCACTTAGAATTCATCTGCAACACTTCTCTTAATAGAAAAGTATAAAACAATTTGTCTACTGACCTGTATGTAGAATGTTGTTCATTATGGCAGTGTTAATTATAAGTAAAGTTAATTGGGGGTTCAATCTGTCAGGATTAGTCTTTTTCAGCATTCATCACTTACCTCTTGAAGGGTTTTTAAGTTCTTGATTCACTGTATTTATTGAACAAAACTGTTATGTGCTGTTTGAATAGTGGATTGGATGTTTTCTTATTCAGTATATTTGCACTGagcaaattaaatgttttaataatgtctTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0042351 'de novo' GDP-L-fucose biosynthetic process biological_process
GO:0050577 GDP-L-fucose synthase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function

KEGG:

id description
K02377 TSTA3, fcl; GDP-L-fucose synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126802 lncRNA upstream 253164 7557254 ~ 7615427 (+) True G93986
TU126801 lncRNA upstream 343248 7524990 ~ 7525343 (+) True G93985
XR_005640327.1 lncRNA upstream 473313 7394373 ~ 7395278 (+) True LOC120566054
TU126744 lncRNA upstream 540905 7327171 ~ 7327686 (+) True G93933
TU126743 lncRNA upstream 545165 7322066 ~ 7323426 (+) True G93932
TU126854 lncRNA downstream 4933 7878919 ~ 7883828 (+) False LOC120565294
TU126855 lncRNA downstream 6552 7880538 ~ 7883828 (+) False LOC120565294
XR_005640303.1 lncRNA downstream 18238 7892224 ~ 7895718 (+) True LOC120565893
TU126892 lncRNA downstream 79429 7953415 ~ 7955102 (+) True G94056
TU126896 lncRNA downstream 117302 7991288 ~ 7991555 (+) True G94057
XM_039811558.1 mRNA upstream 863 7862214 ~ 7867728 (+) True LOC120565646
XM_039810225.1 mRNA upstream 262961 7603460 ~ 7605630 (+) True LOC120564954
XM_039812331.1 mRNA upstream 278292 7586141 ~ 7590299 (+) True foxf2b
XM_039812332.1 mRNA upstream 286754 7580192 ~ 7581837 (+) True foxq1b
XM_039812533.1 mRNA upstream 444771 7415441 ~ 7423820 (+) True LOC120566212
XM_039810957.1 mRNA downstream 6474 7880460 ~ 7890177 (+) True LOC120565294
XM_039811516.1 mRNA downstream 22159 7896145 ~ 7905146 (+) True LOC120565614
XM_039812447.1 mRNA downstream 334467 8208453 ~ 8214500 (+) True rgs4
XM_039810246.1 mRNA downstream 1147531 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 1183355 9057341 ~ 9062036 (+) True LOC120564878
TU126750 other upstream 518004 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1500237 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1654574 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1828472 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 3155406 4711561 ~ 4713185 (+) False trmt1l
TU126885 other downstream 24686 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 363384 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 363384 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1273176 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1678310 9552296 ~ 9557568 (+) True G94239

Expression Profile