RNA id: XM_039810979.1


Basic Information

Item Value
RNA id XM_039810979.1
length 2365
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120565304
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16216296 ~ 16225462 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAAACCACCTCCAGACTATCTGTAGCATCTCCAGTAATGTTTAATGCTCTGCATGAGCATGTATATTGCTCAATCTAGAGCAGAGTTGCACAATTCTGACTTCAGGATGACCAACAGACAACCAAAGTACTCTGGTGTGTGCTAACTTCAATGCCAGTGTTTGAACTGGGGCTTTCTAAAGTTAACTGTGGAGTTGGATGTTTGAGTTGGAGTGGATCAGGCACAGCAACTGCAACTACAAGATTTTCGAGGATGAGAAAGCTCAGAGCGAAAATCTTCTTGCTGGCGGGAGCTCTTGGTCTGTTGGCCCTCcatctttttaaagatttttttgacTACAAAACCGTCCGACTCCACGTAGATGTGATAGAGAATGACATTCAAGTAAGGCGACCCaccacaaaaaagtcatatgtaTACTCCTGgtcaaaatgtcaacaaaatgtGAGTGCTGCCAACATCACAGGCTTCAGCTCTCTTCCTGGTGACATAAAAGACTTTCTCTATTATCGACACTGTCGCCATTTCCCCATGCTGCTGGACCTTCCTGACAAATGTGGAGGAGCTGATAAATCTGCAGAAGTCTTTCTTTTCCTGGTCATTAAAAGTTCCCCTGTGAACTACGACCGCCGAGAGGTGCTGCGTAAAACCTGGGCTAAAGAGAGGTTACACAATGGTGTGTGGATCCGAAGGATCTTCATCTCAGGAACAATTGATACTGGTTTTGAGAAGGAGAGACTGAACAAACTACTCGAGCTGGAGAAACGTGAGTACAATGACATTCTCCAGTGGGACTTTAATGAAGGATTCTACAACCTCACCTTAAAGCAGATACTTTTCCTGGAATGGATGGAAAGGAGCTGTCCGAACGCTCGCTTCCTGCtaaatggtgatgatgatgtctttgccaacacaaacaacatggttGAGTATCTTCAGAGCCTCAAGGAAAATGATGGAAGCAAGCACCTCTTTACTGGACATCTGATCCAGAATGTAGGACCCATTAGAATATCACAGAGCAAATATTTTATCCCAGTTCAGGTGCAGGAGTCAGACTCATATCCTCCCTACTGTGGTGGTGGAGGCTTCCTACTGTCTGGCTATACAGCTTTGGTCATATACAATATGTCCCAGTCCATTCCCATTCTTCCCATTGATGATGTATACATGGGGATGTGTCTGGCCAAAGCAGGACTTGTTCCTGATTCTCATATGGGTGTGAAGACGGCAGGACTGCAGATTCCCTCCAGCACACTAGATGGATACGATCCTTGCTATTATAAAGAAGTTCTACTGGTACACAGATTCCTTCCAGCTCACATGTATCTCATGTGGCAGAGAATACATGATTCTAATCTGAAATGTGGGCCCTCCAAGTCAAGGCTTTAGCATCACAAAACTGTAACTTACATGTAGTGAGAGAGTTTGTTGGCAATTTGTTTCCTGCACCTGCTCTTAGGTTGTGAGTGCAGGTTTGACTCGCTTCATTTCATCATGAGAAAATCTTTGGACTGTTTTTCTACCACTGTTCGGCTGCAGGCTTCAGCACAGTTCAATGGAActtattattttattctttgtCATCAATGTGGGCGAGCAGCAGTCAGCCTGACTCAAAGGGGCACAGCAGTAGTTAGTGTAGGTGTATTGCCCACATACTGTGTGGGTGAGCAACTTTTACTGGAATTAAAAATAGGGTTGCTTGGTATCAGGCTTCAATGTTgtgggttttgtttttcttttctttgttggtACCAAATACTTCTACCTTCTTATTGTTTGATCAGATACTTACTGTTTAAATTATACTTTTATAAAGTAgctatactgtatttatgtaaacTTCTTGTACATCATTATCGAACCAATACCCAGCTGGTGTAAGTGATGCAGGGGGATAAGGTATGCTGTGGTGTCCACAGTCTTACACAAATATAATAAAACTCAGGTTTTCTTAAGACTAGTATGCAGTTTTctgtaatgaaataaaaaaatattaagtaTGCACCTGTATATTTGTGCTCAGAAAGATACTAATGTAGCCTATGTTTTTGTGCCTTAAATCAGTGCTTCTCTAACATATATCACTGGAATTTTGGATGTACTGTCAAATCCCCTTTATATTTATAAGTCAGTAAGAACCATTACAAGGGGTCTCAAATTTTCATGTAAGATTACTGTGTGCTTTCAGGACTTTGTATATTGAAATAAATTGATTACCATgtattttaccattagttaattGAATGTACTGAAATTCATTTTCCTGCTGCTAAGAAGAGGTAATATATTgtgtgattttaaaatgaatggctTTGAGGTTACTGTATATTGTGTACTGCATATAacaaatatgtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129418 lncRNA upstream 51795 16166202 ~ 16169844 (+) True G95952
TU129417 lncRNA upstream 51795 16166278 ~ 16169844 (+) False G95952
TU129381 lncRNA upstream 93699 16070354 ~ 16127940 (+) True G95929
TU129315 lncRNA upstream 240141 15980690 ~ 15981498 (+) True G95877
TU129314 lncRNA upstream 241013 15979752 ~ 15980626 (+) True G95876
TU129522 lncRNA downstream 64361 16289823 ~ 16290420 (+) False kcnn1b
TU129574 lncRNA downstream 277683 16503145 ~ 16503811 (+) True G96070
TU129581 lncRNA downstream 367414 16592876 ~ 16593182 (+) True G96075
TU129582 lncRNA downstream 450745 16676207 ~ 16676577 (+) True G96076
TU129592 lncRNA downstream 546507 16771969 ~ 16772170 (+) True G96086
XM_039812467.1 mRNA upstream 8086 16209374 ~ 16213553 (+) True LOC120566178
XM_039810533.1 mRNA upstream 16894 16174908 ~ 16204745 (+) True LOC120565120
XM_039810534.1 mRNA upstream 16894 16174909 ~ 16204745 (+) False LOC120565120
XM_039810532.1 mRNA upstream 48070 16170463 ~ 16173569 (+) True ndufa7
XM_039810531.1 mRNA upstream 55822 16144113 ~ 16165817 (+) False mast3b
XM_039810977.1 mRNA downstream 31396 16256858 ~ 16275695 (+) True slc5a5
XM_039810978.1 mRNA downstream 31396 16256858 ~ 16275695 (+) False slc5a5
XM_039811576.1 mRNA downstream 52583 16278045 ~ 16284985 (+) True cluap1
XM_039811578.1 mRNA downstream 52583 16278045 ~ 16284985 (+) False cluap1
XM_039811577.1 mRNA downstream 52590 16278052 ~ 16284985 (+) False cluap1
XR_005640328.1 other upstream 1305033 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 1307606 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 1600226 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 2838895 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 3001267 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 95032 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 1630175 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 1641086 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 1643204 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 1646248 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile