RNA id: XM_039811224.1


Basic Information

Item Value
RNA id XM_039811224.1
length 2906
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC120565421
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2586515 ~ 2593983 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaataaaagctgaaagAGCCGATGAACCCTTTTACAGAGTCTGTTTAGAAAGACTTCTCAGAAAGTAGAGAGCGGTCCAGAAATTAAAAAGATAATCTCAGAGACGAGCCAGCAAACGAAGGAAGACCCATCAGacgccttcaaaataaaagcttcttcAAAGGAGCGAGACAACAAGGGCGTCACGGCGAAGGAAGACCCATCAgatgccttcaaaataaaagcttcttcAGACACCTTCAGGCTCAGTCCTTCAAAGGAGCGAGACCACAAGGGCGCCACGGCGAAGGAAGACTCATCAGacgccttcaaaataaaagctgaaagAACTGACGAACCCTTTTTACAAAGTCTGTTCAGAAAGACTTCTCAGAAAGTAGAGAACAGTCCAGAAATTAAAAAGATAATCTCAGAGACGAGCCAGCAAACAAAGGAAGAAATGGACGCTGGTTATAAAGGAAACGTCTCGGAGCAAAACGAAGAGACAGTTGGCGCCGAGAAAATCAACAACTTGAAAGACGCGGTGAATGAAATGGAAGTAGCCAAAACTACAAGTCTGTCTGAAACACAACACGGTGAGGAAACGATCAACTGGCTGAGCTTTCTTAACTTTAAAGACGTCGCGAACGTCTTCAGACTCAGTCCTTCAAAGGAGCGAGACAATAAGGGTGCCACGGCGAAGGAAGACCCATCAgacaccttcaaaataaaagctgaaagAGCAGAAGAACCCTTTTTACAGAGTCTGTTCAAAAAGACTTCTCAGAAAGTAGAGAACGGTCCAGAAATTAAAAAGATAATCTCAGAGACGAGCCAGCAAACGAAGGAAGACTCATCAGacgccttcaaaataaaagcttcttcAAAGGAGGGAGACAACAAGGGCACCACGGAGAAGGAAGACTCATCAGacgccttcaaaataaaagctgaaagAACCGATGAACCCTTTTTACAAAGTCTGTTCAGAAAGACTCAGAAAGTAGAAATTAAAAAGATAATCTCAGAGACAAGCGAGCAGACGAAGGAAGAAATGGACGCTGGTTATAAAGGAAACGTCTCGGAGAAAAACAAAGAGACAATCGGCGCCGAGAAAATCAACAACCTGAATGAAGTGGAAGTAACTGGAACTACAGATCTCTCtgaaactcaaaatagtgaggAAACGATCAACCATCTGAGCTTTCTTAACTTTAAAGACGTCTCGAATATCTTCAGACTCGGTCCTTCAAAGGAGCGAGACCACAAGGGCGCCACGGCGAAGGCAGACTCACCAgacaccttcaaaataaaagcttcttcAAACGCCTTCAGGCTCAGTCCTTCAAAGGAGCGAGACAACAAGGGCACCACGAAGAAGGAAGACTCATCCAactccttcaaaataaaagctgaaagAACCGATGAACCCTTTTTACAGAGTCTGTTTAGAAAGACTTCTCAGAAAGTAGAGAGCTGTCCAGAAATTAAAAAGATAATCTCAGAGACGAGCCAGCAAACGAAGGAAGACTCATCAGacgccttcaaaataaaagcttcttcAAAGGAGCGAGACAACAAGGGCGTCACGGCGAAGGAAGACCCATCAgacaccttcaaaataaaagcttcttcAAAGGAGGGAGACAACAAGGGCGCCACGGCAAAGGAAGACTCATCCGacgccttcaaaataaaacctgaaagaACGGACAAACCTTTTTTACAGAGTCTGTTCAGAAAGACTTCTCAGAAAGTAGAGAGCGCTCCAGAAATTAAAAAGATAATCTCAGTGACGAGCCAGTTTGCTGGTTTTAAAGGAAACGTCTCGGAGCAAAACGAAGAGACAGACGACGCCGAGAAACTCAAAAACAACCTGAAAGACATGATGAAAGAATTGGAAGTAGCTGAAACTACAAGTTTGTCTGAAGCACACCACGGGGAGGAGATGATTCCTACATCACGGGCAGCTGAGCAGAGATGTGAGACTGAAGAGTCGAGTGAGTCAGCAGACGATGACAGGATGAACAAAGAAGACgcagaacaagaagaagaagaagaagaaaagccaTCAGAGACTCTTCCTCTGCAGCCGCTGTCCTCTGAGATCGATCTCTTCAGCCTGAGAGACCAAGACGACGAGAGGGGTCGGCCAGGAGGAATCTCGTGGACGGTGAAGAGCTTCGCCTGttatctgacctttgaccccaaCACTGCCAACTCAGAGCTGCGTCTGAGCGACAGCAACCGGACGGTGACTCGAGAGTGGACGGCGCTGTGGCCGCCGGAGCACCCGGACCGCTTCCGGCGCTGCCCGCAGGTCCTGTGCCGGGAGGGGCTGCTGGACTCGGCGtactgggaggtggagtggCGCGGCGGCGCCGACATCGGCGTCGCCTACAACGACAACTGCCGAGACGGAGACGCGGCGCGCTGCCTGCTGGGACACAACGAGCGCTCCTGGAGCCTCGAGTGCTCGGAGGGAAGCTACGCGGCGTGCCACGCTAACCGGAGGTTCAGGGCAGCCGTGGCGGCGCCTGAACCGTTCGCACGCAGGGTTGGCGTGCACCTGGACTGGTCCGCAGGCGCTCTGTCCTTCTACTGCATCTCGCCGGACGCCATGGTGCACCTTCACACCTTCAGAGACACCTTCACCGAGCCGCTGTACCCGGCCTTCTGGGTCTGGGCGTACGACGGGGCCGTGTCGCTGAGCCAGGTGGAGTTAGGCTGGGAACGGCTGCTGCAGTGAACCGCACGGACATATGGCTCAGTCACCGCGGTAACCCTCGGCTACAGGAGTGACCTCTGCTACAGGAGTGACTGCTATAGGAGTGACTGCTACAGGAGTGTCTGCTACAAGAGTGACTGCTACAGGAGTGACTGCTACAGGAGTGACTGCTACAAGAGTGACTGCTACAAGAGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124755 lncRNA upstream 6629 2579024 ~ 2579886 (+) True G92578
TU124796 lncRNA upstream 34716 2551397 ~ 2551799 (+) True G92603
TU124764 lncRNA upstream 53349 2449583 ~ 2533166 (+) True G92587
TU124787 lncRNA upstream 68098 2507039 ~ 2518417 (+) True G92595
TU124779 lncRNA upstream 85393 2497787 ~ 2501122 (+) False G92594
TU124900 lncRNA downstream 132750 2726733 ~ 2727072 (+) True G92695
TU124919 lncRNA downstream 167149 2761132 ~ 2761357 (+) True G92713
TU124929 lncRNA downstream 181510 2775493 ~ 2800033 (+) True G92722
TU124947 lncRNA downstream 246985 2840968 ~ 2841202 (+) True G92740
TU124954 lncRNA downstream 267009 2860992 ~ 2865958 (+) True G92747
XM_039811240.1 mRNA upstream 124918 2450531 ~ 2461597 (+) True LOC120565432
XM_039811235.1 mRNA upstream 159388 2423987 ~ 2427127 (+) False LOC120565428
XM_039811236.1 mRNA upstream 159388 2424033 ~ 2427127 (+) True LOC120565428
XM_039811234.1 mRNA upstream 165910 2412231 ~ 2420605 (+) True LOC120565427
XM_039811244.1 mRNA upstream 206664 2372054 ~ 2379851 (+) False reep6
XM_039811225.1 mRNA downstream 227659 2821642 ~ 2840859 (+) True LOC120565422
XM_039811246.1 mRNA downstream 251761 2845744 ~ 2859118 (+) True LOC120565437
XM_039811247.1 mRNA downstream 405637 2999620 ~ 3002539 (+) True LOC120565438
XM_039811502.1 mRNA downstream 623743 3217726 ~ 3574149 (+) True LOC120565597
XM_039811258.1 mRNA downstream 743849 3337832 ~ 3348216 (+) True LOC120565455
TU124750 other upstream 4144 2533744 ~ 2582371 (+) True G92575
TU124352 other upstream 206255 2371988 ~ 2380260 (+) False reep6
TU124353 other upstream 206255 2371988 ~ 2380260 (+) True reep6
TU124333 other upstream 218199 2366120 ~ 2368316 (+) False G92333
TU124251 other upstream 510411 2072182 ~ 2076104 (+) True G92293
TU124983 other downstream 388243 2982226 ~ 2983014 (+) True G92770
TU124998 other downstream 416691 3010674 ~ 3014853 (+) False G92773
TU124988 other downstream 417783 3011766 ~ 3094410 (+) True G92773
TU124992 other downstream 417783 3011766 ~ 3094410 (+) False G92773
TU125014 other downstream 531906 3125889 ~ 3132204 (+) True G92782

Expression Profile