RNA id: XM_039811272.1


Basic Information

Item Value
RNA id XM_039811272.1
length 1219
RNA type mRNA
GC content 0.58
exon number 4
gene id si:ch211-191a24.4
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6965547 ~ 6971300 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGATTTAGAAGAGCATGTAATGACTTGAACTTCATCCAAAGAAAACCTCATTTTGTGAAGCTGCAGCCTGgaggaaaagacaaaaacagcctACCTGACCTGAACCTGTAGCTTATCTTccgccttcctcctcctcctcctcctcctcctcctcctccaggtaGGGCGGAGCTGTTTCTACCTTGACAGGAGTGTGGTTCAACAATGGCGTTATAGTTGGACTTAGAGTGCTTTCACCGACAGATATTCACAGTCATTTCTGTGTCCAAACGTATCGGTTTCGGTATGAGCCAGTCGTCCCGTTCAAACCGGGGACACCGGGAGAGAAACGGAGACCACCGAGACTCTTCACACGGAGACAGACGTTCATCACCGGGCGACAGGTCTTCCTCTCGAGCCCCATACCTCCCCAGAGAAGGCAACGCCCCTCCCAAACCCAGACATGTGCGGGAAGTCCCTAGAGTGGAGCACCACGAGTCCAAATGCTCACACATTTGCTCCAGGAGAGGCATCGTGCTGATCGTCTCCGTACTGACCAACAGCCTGGTCCTGATCTGTCTGATTGCAGCTCAGATGGTGACATCAGGCATGTCCGCCATGGGCGGGCTGGGCGGCTTCGACATCAACTCCAACTTTAACATGGAGGGCACCGAGATGCAGAAGGCGCGCGACCTGGACATTCAGTACAGCCAGATGAGGGCGCCGGGCATTTACGGTGGCATCCCCTTCACCCTGACCCTCGGGGTCCTGTCGCTGCTGTTTGCGGTCGCCGGGAACAAGCCGCCCCACCTGATGTCCCGTAAGCTCCTGTACGGAGCGCTGGTGTTCCAGGCGGTGGGCGCCGTGGCGGTTGTGGTGGCCGTGGGGCTTTACCTGCACTTTGTCATCAGCGTCAACTCCACCGACGTGTGTAAGCAGCGCGAGAGGCTGTACGCCCGGAGCGGCTACACCTGGATGAACTGTAACGTGAGCGGGGGGGATGCCGCCGTGGCCCTGTTTGCGCTCATCACGGCCATCCTGTACGCCGTCGGCACAGCGCTCACCTTCCAGACGATTCGGGGAGTGAGGCGCTACCTGGAGGAGGTAAAGCGCAGAGAGGCGGAAAAACAGAAGGCCCGAGCCGACTCCCAGAGGTCCCCGCTGAGGGCTGAAACCATCTTTGTGTGAGAGGCCAGAGAAGAGacctctggggggggggggggctgtatCCCAGATAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126543 lncRNA upstream 85466 6879803 ~ 6880081 (+) True G93791
TU126542 lncRNA upstream 89054 6876151 ~ 6876493 (+) True G93790
TU126505 lncRNA upstream 128729 6836591 ~ 6836818 (+) True G93758
TU126449 lncRNA upstream 375894 6589203 ~ 6589653 (+) True G93713
TU126433 lncRNA upstream 566550 6390156 ~ 6398997 (+) True G93700
TU126583 lncRNA downstream 3007 6974307 ~ 6975368 (+) True G93820
TU126587 lncRNA downstream 4344 6975644 ~ 6977546 (+) True G93823
TU126598 lncRNA downstream 21556 6992856 ~ 6993162 (+) True G93834
TU126619 lncRNA downstream 156014 7127314 ~ 7130558 (+) False G93851
TU126620 lncRNA downstream 156014 7127314 ~ 7130751 (+) True G93851
XM_039810252.1 mRNA upstream 242270 6672071 ~ 6723277 (+) True ghrhrb
XM_039810253.1 mRNA upstream 242270 6672071 ~ 6723277 (+) False ghrhrb
XM_039811997.1 mRNA upstream 324427 6627642 ~ 6641120 (+) True cyldl
XM_039812355.1 mRNA upstream 583949 6354892 ~ 6381598 (+) True rhpn1
XM_039811775.1 mRNA upstream 620466 6335751 ~ 6345081 (+) True LOC120565762
XM_039811274.1 mRNA downstream 35870 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811275.1 mRNA downstream 136849 7108149 ~ 7127272 (+) True igfbp3
XM_039811515.1 mRNA downstream 292247 7263547 ~ 7285759 (+) True LOC120565613
XM_039811822.1 mRNA downstream 382548 7353848 ~ 7379344 (+) True LOC120565797
XM_039812274.1 mRNA downstream 426838 7398138 ~ 7413692 (+) True LOC120566053
TU126420 other upstream 597193 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 751530 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 925428 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2252362 4711561 ~ 4713185 (+) False trmt1l
XR_005640230.1 other upstream 2671657 4290341 ~ 4293890 (+) False LOC120565391
TU126750 other downstream 378510 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 927372 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 1266070 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 1266070 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 2175862 9147162 ~ 9159695 (+) True G94199

Expression Profile