RNA id: XM_039811329.1


Basic Information

Item Value
RNA id XM_039811329.1
length 4459
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC120565497
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11248434 ~ 11304093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGGCTTTCAGAGTATGACGCGATCCGCTCTGTTTTGGGACAGGGGACCTGAAAGCTCAGGTGAACTACTTTTACATGtttttctacCGGAGACTGGCTGTAAATCAGCCGATGCAGGCAGCTGTCATGAGGTGAAGACAGCCTACATGATGCGCCAAATAGGACCGGTGGAGCTGGTGCCAGACAGGCCAGGAACAGATGAGTCTCTGCGAGTGTGTGTCTACCCTGGGCCCAGCTGCTGTACCAGTAAGATGGAGGACAGCTACATGGCGGCTGTTCGCAGTGAGACGCAGCAGAAGATGCAATCCTACAGCTTTGAACTTAAGTACCTGATCGCTGGACACACCAAGGCCTACCAAGACACCTTTGAGTCGCTCGTGTCCTTCACATCTAACATGACCAGCACTCTGTTCGACAGCGCCTACTCTGCTCTGGCGTCCGACTGTCGCCCCCTTGTGTTTCGGCTGTTCAGCGACATCAAACGCCACCTTTCTGGAGACTCCAATTCCACATTGGACAACGCTGTGCGTCGGTTCTACAATGATCTTTTCCCGTTGGTCTACCGCCGCCTGCTCAACCCTGGGATCGGCCACCTGACAGCCAAGTCCTATTTCCCCTCCTCCACAAATCACGACGACTGCCTGCGGATGACGCGGCAGGATGTCAGCCCGTTCGGACCCCATCCTCGCCTCCTGGTCAGCAGCTTGTCCCGTGCACTCGGGGTGGGCCGAGCACTGAGCCGACTGCTGGTACTGGCTGGAGAGGTCGTGAACGCGACCGAGAAGGCAACGTTATCCAGAGAGTGTGGGCGAAGCTTAGTGAGGATGCAGTACTGTTCCCACTGTAGAGGGATGACACTGATACGGCCCTGTACCGGACTGTGTGTCAACATTATGAGAGGATGTCTGGTGGGTGTATCAGAGCTTGGCGCCCCCTGGGGGAGTTTGGTGGTGTTGCTTCAACGGTTAGCTGCTACCTTAGCAACCAGCAGCAACCACAACAGCATGGAGTTAGCTCTGTTAGCAGTCCGAAATCATGTGAATGATGCTATACTGCACGCTCAGCTGCACGGGCCACGAGTTACAGCCACAGTAGAGAAGGTGTGTGGACCCCAGGCAGCTGGTCCCATGATGCCAAGTGCAAATCCCACCACCTCGCATGTTACACCATCTGTGAGCCCTTCTACATCAGTAACCTCAGAGAGGTCCAATGGGACATCGCCTCCCTCAGCTCACCAGCGTCTGCAGCCGCAATCCCGCAGGTCATTCCTACTTAAAGGCTCCAGAGGAGACAAGAGTCGCAACCTGAAAAAACTGTCAAGggAGTTTGAGGGCTCTATCCAGCGGTACCAGTGGTTTTTCTCAGAGCTGCCAGAGATGCTATGTGAAAGTGAGATGGAGGTTGAGCAGCACACATGCTGGAGCGGCCAAGAACTCgtagaaagTTATGCAGGTCTTGTGGTTGGCAGCAGTTTAAAAGCCCAGAAGGAGAACCCAGAGATGACCGTCCGTAATACAGATCCTGTGCTCAAGGGGGCGAAACAGAGGCTGGAGCAGctaacacaggaGGTGTTAGTGGACCTCGGCTGGGTGAGCAAAGccagaggaaaggaggaggaagaggagggagggagcgcacagacagagagaggcagcgGAGACGACTGCGATGATGAAGATGGCTGTGAAGCATCTGGTGTGGAGAACGGTGATACATCCAGCGGTCGTAGTCCAGTGACAAAGGACattgctcctcctcctcctcgtcgcCTCGTCCCTCCTCATCACCTCTCACCACCACAGGTGGCTGTTCAAGGCTCAGCCCACACGCTGTCTGTTGAACCTTTGACCCTGGCGACCATGCTGCTCCTACTGCTGTCACCGTGGGAACACCGCTGATCACAGAGAGACGCTCTGACAGAGACAAAAAGACTGAGAGACAACCACAAAGGTTTTGTGGTGAAGTTGAGCATTTGGAGTTTCTGTAAGCACAGGTCAAACCCACTCTGATCGGTTTATGTTTCGGGTGGGACAATCTGTCGGTTCATCACAGTTGCAGGTGCACAGTATGCATTTTAATGTTACCTGTACTGACCTCTACGTGTTTGGTTATGTGTATTTAACTCTGATAGGATAGATTGCACAGCACTACTGACGTTTTTGAAGAGAGatgtaaatacaaatatatatattatatatttatatgaagAATTTCTATAGATAACAAAGGCTTGATGTGTAAATAGAGATTACAACAGAACAGAAGAGATTGACTTGGATGTTAAGCAgtgttttgtttggtttgtatCCCCCATGGAGACTAAGATCCATGACAGCTATAGTTCAAGCTGAAGGTCTTCACTGTATAGCAGCAGTGTGCTCACAGTGAGGGCACTCTTGTGAGGACGTATTAATGTTGAAGAGAACAAAGCACTGATATGCAAAACAACCAATTACGCAATACTTCAGACCATTTACAGATGGCCACGCAGCATAATGAAGAATTTGACAGTTTGGCCTGTAAATCTGTGCGGACTAGAGCCCATCCGGCACTTTTCTTTCACAGAATCATGCTCTTTTTAGTCATGCAAGCTgggtgatttattttatttctgcagCAAGTACTGCATGTTGAGAGTTTCAACTGTGTAACACTTGCTCAAATGTTTAATTCCTCCAAAAATGACCATTTAATAGTTGAGATCTCTCCCAAGAAACTGTGTCCTCTGGTAGTTTGACATTTCTACACATATACAAACCTTTTATGGTCTTGGTAGTTGTGGAAGAACTTAAGACTATTTTCTTCTCAAGATGTACAGCATGCAGAGTTGTAAAAGGACTACAGAAAGGGATGTAACAGCTTCAATTTTAACTTCAATTTCACTTGTAAACTACCACAGATATCTTGACAGAAAGTTCAGAGTAAAAATAAGAATATCCTAACCAATAAAAAGCACCAAATACAAGGAAATACTAAATATGGCCTGTATGTAAGAGCAAAAAGACACAACCTCCTGCCAGAACAATGAATAATTGAACATCTTGTTGTcatatgtaaacacacacaaaacgtgtCACAGTGGCTGGTCTCCATATGTATTAATGAAAACTGCAATAGTGAGATAATATTTAAGACATCTAACAAAATACGTATTATATATTAAAGGCTTTTTCTGAGTCTGATACACATGTTATCAGCTTGTCTCCATCCAGTGAAGACAAGAGATGGAGTATAAGAGAGTGATCAGAGTACAGCTGAGCCCTGGTCCAAACGTGAATTAAATGTAATTCAtgttaattaagactatcaaGTCCTCTCGGCTCTCTGTCGAGTCTCAAACCCCCCAAACTACACACAACAAGCAGGACAGACAACTGGAATACTGATTAATACATTCAAAATGAAGCAAATGAACCAGCTGACTTTCTCCTCATCATTTTGTCCCATATAGTCTTTTGAAAATTCCCTCATAAATGTATCTACTGTCATCACCTGAGACAGTTTATTCAATAAGGAATGTGAGACGACTTCAAAAATACCTTTAAGAGCCAACGTGTGTGAGTTATCTGGGCAGCGAGCCCAAATACCATGTTAGCTGGCAGGATGCTTTCACAACATAATTTGTCAAACAAGCGTGCTATTATTTGATTACTATTTAAACGTTATACCCAAATCAGATGAGATTTTGGATTGGAGCCCGCCACTCCATCCTTCACAGCTCTTGCTAGGCGGCCTCCATAAACAAAACACCAACACGCACCCGTGCACATACAGATAAGTGGATGTATAAAAGAGTGGGCAATTAACAGCAATTTTGGAGTtatgaaaaatttaaaaagaaacattattttataaaCGTATAAACTTGAAAACATAAAAGCTCTCTTGGGTAATAGTTCAAATGTAATCGTCCGGAAAGTGAAGATGAACTGTAAGCCACTAACTgctactgtatctgtggatcaCAGGTTTAAATGAGATATATTTGCATTAAATGACGTGGGACTCTTGTTAGTGCATATTTGTATATGATACCGAGTGATGTTTTTCACATCAGCATAGAAGTGACTTTCTGTTGTTCCTCTTGTACTGTGTTGACATAATGGTTCTCAGCATGTGTGTTGAGGCACACTGGTGTGCCATGGAGGGAGCTGTGCTGCGTGTCATTGTCAAATCATTAAATGTACTTTATCAAGGTTTAACAGCTCTTTGTGTGTAGAAATTCTAATGTTGTTGTAGCAGTATGCAGGAACACCAGGATGCAAGAAACAACCAGTTAGCTACGGTAGTATGGTTTCTCTCCCCACACTCTGAAAACTACTGTGCTAATTTATTCAACTTAACCAGTGACTCTCATGTGAAATTTTATGAAACCTACTGTAATCCATGGTGTCCTGCTACTCTGTTGTGtcattaatctgcagattaatatCCTCAGTAATAAACAGTTTTCAAATA

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127746 lncRNA upstream 8197 11238444 ~ 11240237 (+) True G94706
TU127731 lncRNA upstream 53504 11194647 ~ 11194930 (+) True G94691
TU127730 lncRNA upstream 72217 11176004 ~ 11176217 (+) True G94690
TU127728 lncRNA upstream 121414 11126756 ~ 11127020 (+) True G94688
TU127727 lncRNA upstream 126750 11121469 ~ 11121684 (+) True G94687
TU127799 lncRNA downstream 272695 11576788 ~ 11577261 (+) True G94747
TU127840 lncRNA downstream 347429 11651522 ~ 11659072 (+) True G94779
TU127859 lncRNA downstream 517558 11821651 ~ 11821882 (+) False znhit6
TU127883 lncRNA downstream 612538 11916631 ~ 11920037 (+) True G94813
TU127963 lncRNA downstream 857545 12161638 ~ 12196616 (+) False lrp8
XM_039811528.1 mRNA upstream 10533 11222522 ~ 11237901 (+) True ccdc17
XM_039811350.1 mRNA upstream 141236 11105141 ~ 11107198 (+) True LOC120565506
XM_039811575.1 mRNA upstream 300118 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039812278.1 mRNA upstream 488505 10748929 ~ 10759929 (+) True LOC120566056
XM_039812279.1 mRNA upstream 514473 10722915 ~ 10733961 (+) True LOC120566058
XM_039812317.1 mRNA downstream 7645 11311738 ~ 11356871 (+) True LOC120566075
XM_039812048.1 mRNA downstream 55597 11359690 ~ 11458146 (+) True LOC120565923
XM_039810317.1 mRNA downstream 169263 11473356 ~ 11490038 (+) False LOC120565022
XM_039810318.1 mRNA downstream 169263 11473356 ~ 11490038 (+) False LOC120565022
XM_039810319.1 mRNA downstream 169831 11473924 ~ 11490038 (+) True LOC120565022
TU127615 other upstream 300188 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 307190 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1088627 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1300204 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 1345245 9902285 ~ 9903189 (+) True G94376
TU127781 other downstream 124938 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 1701483 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1868932 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 2075305 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 3315265 14619358 ~ 14621413 (+) True G95460

Expression Profile