RNA id: XM_039811350.1


Basic Information

Item Value
RNA id XM_039811350.1
length 1012
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120565506
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11105141 ~ 11107198 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaaatcccagaatgcacttgcttcgctgctctacgaggccactcccaagccacgcctaccggtTCGAGAGGGCAGGAGGGAGGGAAATTcaaccttatatactgtctatgctcaAATGACTCGAAAACTGAAAAGACACCAGTTAATGTGAGTCTCCGTGACGAGTTAGTtgataaattaatttaaatactagcgtttttgttttttttcatcgaAATGGTGCTAAATTGCTTTGTACCGCGATGTACAGCCAAAACCAGGAAAGGACAAGCAGTAAGTTTCCATCATTTGCCTGTTAAACATTTGGAGCGGTGCAAACAGTGGCTGCGGGCTATCAACCACCCAAAGTTTCGAGAAGACACCGATATGGGGAACCTGAAAAACCTGAGGGTTTGCAGTCGCCATTTCAAGCTGGAAGACTACGAACCCAATGTACTTGGAATGAAGAGAATCACTCTAAAGGACACAGCAATTCCGTCGATATTCACCTTCCCAGAAGACGAACAGCCCGGGCCATCTGTTAGAAAACGCATTCGCCGAAAGACTCCAATCGCGTCTAATCCTTTAGTGTCCTCGTCGGAGGATGAAGAACAATTGCTACTGACCTCAACACCGGTCAAAATTCCTGCCTCTGGCCAAGAACAATTTtcacCTGGAGGCCTCAATACCAGCGCCGGCAGCATTGCTGAATTAACAGTCACCCTCTCATCAACATCTTCATCAGATGATGAAGGTGGAAAGGACTGGCGTGAAAAGAAGATAATTGTCAATGAATCCAGCCTCATGTCACTCTTCAAATTTTGCCAGATGTGCGGGAAACCAATTTTATCAAAGAAAATTGTCGACTTTGGGGCAAAGAGGGAGGTGGATTGGACATGTCTTGGGGGGCATTCTGGGACTTGGACATCTTCACATGACATGTGAACCTCCTTGCAgcctagggctgtgcaattaactaaaatagtataatcgagaaaaaacgaTTTATTTTTGCcctgttctgttttgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127711 lncRNA upstream 619 11104221 ~ 11104522 (+) True G94677
TU127710 lncRNA upstream 2326 11102476 ~ 11102815 (+) True G94676
TU127708 lncRNA upstream 3572 11101328 ~ 11101569 (+) True G94674
TU127628 lncRNA upstream 107940 10996477 ~ 10997201 (+) True G94613
TU127624 lncRNA upstream 128076 10963548 ~ 10977065 (+) True G94609
TU127720 lncRNA downstream 7200 11114398 ~ 11114677 (+) True G94680
TU127721 lncRNA downstream 8506 11115704 ~ 11116031 (+) True G94681
TU127722 lncRNA downstream 9701 11116899 ~ 11117140 (+) True G94682
TU127723 lncRNA downstream 10133 11117331 ~ 11117684 (+) True G94683
TU127724 lncRNA downstream 11080 11118278 ~ 11118503 (+) True G94684
XM_039811575.1 mRNA upstream 156825 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039812278.1 mRNA upstream 345212 10748929 ~ 10759929 (+) True LOC120566056
XM_039812279.1 mRNA upstream 371180 10722915 ~ 10733961 (+) True LOC120566058
XM_039812280.1 mRNA upstream 373836 10722902 ~ 10731305 (+) False LOC120566058
XM_039812277.1 mRNA upstream 390259 10696023 ~ 10714882 (+) True tm4sf18
XM_039811528.1 mRNA downstream 115324 11222522 ~ 11237901 (+) True ccdc17
XM_039811329.1 mRNA downstream 141236 11248434 ~ 11304093 (+) True LOC120565497
XM_039812317.1 mRNA downstream 204540 11311738 ~ 11356871 (+) True LOC120566075
XM_039812048.1 mRNA downstream 252492 11359690 ~ 11458146 (+) True LOC120565923
XM_039810317.1 mRNA downstream 366158 11473356 ~ 11490038 (+) False LOC120565022
TU127615 other upstream 156895 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 163897 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 945334 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1156911 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 1201952 9902285 ~ 9903189 (+) True G94376
unassigned_transcript_388 other downstream 141377 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 321833 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 1898378 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 2065827 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 2272200 13379398 ~ 13382744 (+) True LOC120564964

Expression Profile