RNA id: XM_039811369.1


Basic Information

Item Value
RNA id XM_039811369.1
length 1718
RNA type mRNA
GC content 0.49
exon number 13
gene id ddx49
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15343666 ~ 15350593 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGGAGAAGAAGACAGTGCGGTTACGTAATCATACAGCGACACGTAACACAGACACGAGGATGTTTTACTCTACGTTAAAATTGAGTATTTCAGtgattattttgtaaaataaattgcACAGAAGTACTCATCCAGCCTCAGAGAACGAGATAAATCAGAAATGACTGACTTTTCGTCGCTGGGTCTCTCAGACTGgctggttaaacagtgtaaacagcTGGGGATCAACAAACCCACTCCTGTCCAGGAAAACTGCATGCCGCCCATACTAGAAGGTCGGGATTGTATGGGCTGTGCTAAGACCGGAAGTGGGAAGACAGCAGCGTTTGTGTTGCCGGTGGTGCAGAAACTGTCAGAGGACCCATATGGCATCTTCTGCTTGGTGCTCACTCCAACCAGGGAGCTCGCCTATCAGATTGCAGAGCAGTTTCGAGTCCTGGGGAAGCCACTGGGTCTGAGAGACTGCATCATCGTCGGTGGAATGGACATGGTGAGCCAGGCCCTGGAGCTGTCCAACCAGCCACATGTAGTCGTAGCGACGCCCGGACGGCTGGCTGATCACATCCGCAGCTCCGACACCTTCAGCATGAGCAAGATCCAGTTCCTAatTCTGGACGAGGCGGACCGGCTGTTGGAGCAGGGCTGTACTGACTTCACCAAAGACCTGGAGACGATCCTGGCTACTTTACCGGCTAAACGGCAGACGCTTCTGTTCAGCGCCACGCTCACTGAAACCCTGCACGAGCTGAAGAACATCGCCATGAACAAACCTTTCTTCTGGGAGAGCAAGTCCGAGACACGGACCGTGGAGGAGCTGGACCAGAGGTACATCCTCACTCCAGAGAAGGTAAAGGACGCCTACCTGGTCCACTTGATCCAGACGTTTACTGACGAGCATGACGACTGGTCTATCATCATCTTCACCAACACGTGCAAGGACTGCCAAGTCCTCACCATGATGCTGCGGGAATTTAACTTTCCAACCATCTCCCTGCACTCCATGATGAAACAGAAACAACGATTTGCAAACCTCGCAAAGTTCAAGGCCAGCGTCTTCAAAATCCTGGTTGCGACAGACGTGGCGGCCAGGGGTTTGGATATTCCAACTGTCCAGGTCGTCATCAACCACAACACCCCCGGCCTTCCCAAGATCTACATCCACAGAGTCGGACGAACCGCACGAGCAGGGAGGAATGGAGTGTCCATCACACTGGTGACGCAGTACGACATCCACCTGGTCCACTCTATCGAAGGACAGATTCAGACAAAGCTGAAGGAGTATCCTGTGGAGGAGAAAGAAGTCCTGAAGATCCTCACCCAGGTCAACGTGACCAGACGGGAGATTGAAATAAAACTTGAGTCAACAGACTTTGATGAGAAAAAGGAGATCAACAAAAGGAAACAGCTGATCTTGGAGGGGAAGGATCCAGACCTCGAGGCTAAGAGAAAAGCCGAGCTGGAGAAGATCAGGAGCCAGAAGAAGAAGTTTAAACAAAAAATCCAGGAGAGCATTCAGAGACAGAAACATggacagctgaaaaaaaaactgataaagagaaaacagatgaaaaagaaaaaggcagcACAGGCAACAGCGTGAAAACTGCTGTGACCCATGTATATACACTAAAGATGTTATTGTACAATATCTAATCATTTTATGTGTGACGATCTGCAAATAAATTTGAACTTGTGCTGAATTTCATACCATCAAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129007 lncRNA upstream 46473 15296284 ~ 15297193 (+) True G95640
XR_005640228.1 lncRNA upstream 75481 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA upstream 75481 15231371 ~ 15268185 (+) True LOC120565370
TU128812 lncRNA upstream 411585 14930512 ~ 14932081 (+) True G95496
TU128813 lncRNA upstream 411585 14931069 ~ 14932081 (+) False G95496
TU129053 lncRNA downstream 37405 15387998 ~ 15389142 (+) True G95681
TU129093 lncRNA downstream 124001 15474594 ~ 15478157 (+) True G95710
TU129122 lncRNA downstream 278376 15628969 ~ 15632805 (+) False LOC120564959
TU129124 lncRNA downstream 282320 15632913 ~ 15633568 (+) True G95729
TU129126 lncRNA downstream 283905 15634498 ~ 15635947 (+) True G95731
XM_039811377.1 mRNA upstream 47986 15293595 ~ 15295680 (+) True uba52
XM_039811130.1 mRNA upstream 190089 15027011 ~ 15153577 (+) True rabgap1l
XM_039812446.1 mRNA downstream 28922 15379515 ~ 15382779 (+) True lsm4
XM_039812466.1 mRNA downstream 120054 15470647 ~ 15472763 (+) True LOC120566177
XM_039812071.1 mRNA downstream 147433 15498026 ~ 15505221 (+) False mpv17l2
XM_039812074.1 mRNA downstream 147439 15498032 ~ 15505221 (+) False mpv17l2
XM_039812072.1 mRNA downstream 147445 15498038 ~ 15505221 (+) True mpv17l2
XR_005640328.1 other upstream 427060 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 429633 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 722253 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1960922 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2123294 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 969901 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2505044 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2515955 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2518073 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2521117 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile