RNA id: XM_039811629.1


Basic Information

Item Value
RNA id XM_039811629.1
length 2931
RNA type mRNA
GC content 0.48
exon number 16
gene id ncl
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17864337 ~ 17875307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCGCGACTTcgttttctctgtctttcctgTCCAATGTCCCACAGAGCAGGCTGATCCACGTGTATACGTTAGCTATTTCGTAAATTGTTTCCAAACGTCCAGTTACTCGTGTTTCATTGAAACACACAACAGCACCATGGTGAAACTAGCAAAGGCAGCAGGCAAGCAAGCAACACAGAAGAAAAAAGCCCCTCCACCCCCCAAAGAAGTGGAGGAGGAATCTAGTGAAGAGGACAGCAGTGATGAGGAAGAGACTCCTCCCCCTAAAGTGGTGAAGAAAGCCACACCAGCGAAAGCTACACCAGTCGTTAAAAATGGTGCTGCTGCCAAAAAAGCAGAAAGTgaggatgatgaggatgatTCTGAGGAGGAGTCTGAAGAGGAGACCCCCCCACCAAAAAAGACTCCTGCAAAGGCTAAACCTGCACCAGCCAAAGCAGCTCCTGCAAAGGCAGAGgagtctgatgatgatgatgaagaagacGACGATGAATCTGAAGAAGAGACCCCACCACCCAAGAAGGCTACTCCAGCTAAACCAGCTGCCAAGCCCCCAGTGAAGGCTAAACCTGCGAAGGAGTCTtctgatgaggatgaggatgatgacTCAGAGGAAGAGGCCCCACCTCCCAAAAAGACTACTCCAGCTAAACCAGCTGCCAAACAAGCTGCAAAGGCTGCCAAAGAGGAGTCTGACGACGAcgacgatgatgatgaagatgATTCTGAAGAGGAGATGGACACCACTCCTGCTCCAGCAAAGGCAAAGAAAGCCGGCATGGTCAAGGCCAAGGAAGAATCagaggaggatgatgatgaagacgatgacgacgatgatgatgaggaAGAGGAAGCCCCAGTGACTCCTGCAAAGAGGAAGGCAGAGGGCAAGAAGGACACACCTGCTGCCAAGAAAGCAAAGGCAGAAGGCGATGGGTTCTGTCTATTTATTGGAAACTTGAACTCCAACAAAGACTTTGAAGAAATCAAGGAAGGCCTGAGAAAATTCTTCTCCAAGAACAGCCTTGAGGTCGCTGATGTCAGATTGGGTGGATCCAAGAAATTTGGTTATGTGGATTTTGCATCTGAGGAAGACATGCAGAAGGCACTGGAGCTTAATGGCAAGAAGGTTATGGGTCAGGAGTTGAAGTTGGACAGGGCCCGAAGCAAAGACAGCTCACAGGAGGGCAAGaaagAGCGAGATGCACGGACACTGTTTGTGAAAAACCTTCCCTTCTCTGCAACGGCTGATGACCTGAAGGAAGTCTTTGAAGATGCAGTTGACGTCCGGTTACCTCCAGGCCAGAACGGTTCAAACAGGGGCATTGCCTACATCGAGTTCAAAACTGAAGCTGAAGCGGAGAAGATGCTGGAGGAGGCTCAGGGAGCCGATGTCCAAGGGCGCTCCATCATGGTCGACTATGTTGGAGATAAGAGCCAGAAAGGGTCCATGGTGGCAGCGTCAGGAGCAGCCAGTAAAACGCTGGTGGTGAATAATCTGGCCTTCACTGCCACAGAGGAAGCCCTGCAATCCACATTTGAGAAGGCAGTCTCCATTAGGATTCCACAGAGAGATGGCAGACCTAAAGGTTTTGCTTTTGTAGAGTTTGAGAGTACAGAGGATGCCAAGGACGCTCTGGAAAACCTCAACAACACAGATATTGAAGGCCGGTCGATCCGACTGGAGTACAGCCAGAACAGTGGCAGGGACGGGGGCAGAGGAAACTCGGGTCCAACAAAAACCCTCTTCGTCAAGGGTCTCTCTGAGGACACAACAGATCAGACCCTCAAGGAGGCGTTTGAGGGTGCTGCAGCAGCCAGGATAGTCACGGACAGAGAAACGGGCTCATCAAAAGGCTTTGGCTTTGTGGACTTTCACAACGAGGACGACTGCAAGGCAGCCAAGGAGGCCATGGAGGACGGCGAGATCGATGGCAGCAAGGTGACCCTGGACTACGCCAAGCCCAAGGGTGAAGGCGGCTTCCGTGGAGGTCGAGGTGGAGGGTTTGGCGGCCGCGGCGGTGGCAGAGGAGGTCGTGGCGGTTTTGGCGGCGGCGGATTTGGAGGTGGATTTGGCGGCCGAGGTGGTGGTGGCAGAGGAAGGGGAGGCCCCCGTGGAGGTGGACGCGGACGTGGTGGCGGCTTTGGAGgtGGAAGAGGTGGCGGAGGATTTGGAGCCAAACCCCAGGGGAAGAAAATCAAGTTTGATGACTAAATCCTTAGTCTATTTTACTTTTTGAATGGACTCTGGTTTCATCACTTTTCAGAGCTTTTGGACATTCCAGAAAGCGTCattgatatatatttaactgttAATGGGCATTTTAGCCCTTTATTTAGGACCCCTCAAACCTTCCCCATCCTTGTGTGCCAGAATGGTACTTTTGACCTTCTCAGCTGAAGTGCTTTGTGAGTACTGAATGTCCCAAATGCGAACCTGTACCTCTCGCCCTCATTAGTTTACTTGCTTTTTCGAAGGAGTAAAATGGAACGGGTCTGGCAAACAAGTTTGCTGTAATAAAATACGCTTGTCTATGTCAGATACATTGTGTAAATTTAAACAGTTTGTATGATTTCATTTTacctttttgtaaaaaaaatacacttgtatccatatgattttgtttttttgtttttactttgtcATTTAGTTTGCTTTAGCTGCCACGTTTTACtgtaatgtgcaaaacatatttTGATAGATGATGATTTGAGTCAGTGCTCCAAGAGTTGGATGTTAAGGAAATGGCAAAGGTGTTCTGTCATGTTTGTTTGGTGGGGCACAGTCGGTGTCACAGAGGATGACGTACCTCTTCTCTATGTAACATAAAATATTTGTAGTGCattgacaaatgtttttttttccccatcggAGAATCTTAAGATTTTCACGTGATTAAATAAAACCTTGTAGGTGGtgatttttaaa

Function

GO: NA

KEGG:

id description
K11294 NCL, NSR1; nucleolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129781 lncRNA upstream 165289 17670708 ~ 17699048 (+) True LOC120565502
XR_005640265.1 lncRNA upstream 166180 17670680 ~ 17698157 (+) False LOC120565502
XR_005640264.1 lncRNA upstream 169974 17670681 ~ 17694363 (+) False LOC120565502
XR_005640171.1 lncRNA upstream 227617 17622984 ~ 17636720 (+) False LOC120564955
TU129849 lncRNA downstream 16345 17891652 ~ 17892398 (+) True G96273
TU129944 lncRNA downstream 711321 18586628 ~ 18586965 (+) True G96341
TU129956 lncRNA downstream 737722 18613029 ~ 18613260 (+) True G96353
TU129966 lncRNA downstream 744251 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA downstream 744251 18619558 ~ 18621342 (+) False G96361
XM_039811759.1 mRNA upstream 4926 17855631 ~ 17859411 (+) True nppc
XM_039812403.1 mRNA upstream 110503 17749432 ~ 17753834 (+) True srek1ip1
XM_039811535.1 mRNA upstream 396827 17370102 ~ 17467510 (+) True LOC120565631
XM_039812333.1 mRNA upstream 495247 17344165 ~ 17369090 (+) True kif14
XM_039812402.1 mRNA upstream 520788 17338407 ~ 17343549 (+) True ddx59
XM_039811848.1 mRNA downstream 45532 17920839 ~ 17926636 (+) False polr2h
XM_039811847.1 mRNA downstream 46583 17921890 ~ 17926636 (+) False polr2h
XM_039811846.1 mRNA downstream 46646 17921953 ~ 17926636 (+) True polr2h
XM_039812053.1 mRNA downstream 53296 17928603 ~ 17941735 (+) True mfsd8l1
XM_039812057.1 mRNA downstream 53297 17928604 ~ 17940351 (+) False mfsd8l1
TU129832 other upstream 5185 17855637 ~ 17859152 (+) False nppc
XR_005640269.1 other upstream 1523289 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 2947731 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 2950304 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 3242924 14619358 ~ 14621413 (+) True G95460
TU130059 other downstream 907293 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 1655460 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 3815590 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 4408339 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 4610204 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile