RNA id: XM_039811643.1


Basic Information

Item Value
RNA id XM_039811643.1
length 3962
RNA type mRNA
GC content 0.56
exon number 28
gene id fcho1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14081556 ~ 14144941 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAATTTCTACTACTATGATCAAACTGCTCAGGGTGCATTCAAGTGTCGGACTGTGGCTGCCGAAAGGACTGGGGATGGAAAATGTACAATAAACGCTATTGGAAAAGTCTATACAGATTGCTGTGAATCTCTGAGTGAATATGGCCTTCTTTAAGAACAACTTCTGGGGGGAGAAAAATGCCGGCTTTGACGTGCTCTACCACAACATGAAGCATGGCCAGCTGGCAACCAAGGAGCTCGCCGAGTTTGTCCGTGAGAGtgcTGCTATTGAGGAGACTTACTCCAAATCAATGAGCAAACTGGCCAAGATGGCCAGCAACGGAAGTCCACTGGGGACTTTTGCTCCCATGTGGGATGTGTTCAGGGTGTCTTCAGACAAACTGGCCCTCTGCCACCTCGAGCTGATGAAAAAGATGAACGATCTCATCAGGGACATCAACAAGTACGGCGATGAGCAGGCCAAAGTTCACCGCAAGACAAAGGAGGAGATGGTGGGGACAGTGGAGGCGGTGCAGGCGCTGCAGGTTCAGAGCGGTCACCTACAGAAGTTAAAGGAGGGTTACCACGCCAAGTGCTTGGAGCTGGACCGGCTCAGGAAGGAGGGCGCTCCACAGAAAGAACTGGAGAAAGCGGAGCTGAAGTCTAAGAAAGCGGCCGAGTCATTTGCGCTGTGCATCGAGAAGTACAACCGCGTGGGAGGAGAGTTTGAACAGAAGATGAGCGAGTCCTCGCAGaagTTTCAGGAAATTGAGGAGGCCCACCTGCGGCAgatgaaacagctgatcaaagGTTACTCCCACTCCATAGAAGACACCCATGTTCAAGTGGGACAGGTCCACGAGGAATTCAAGCAGAATGTGGAAAACATCGGCATCGATAACCTCATCCAGAAATTTGCAGAGCAGAAGGGCACGGGCAAAGACCGGCCAGCTCTGGTTGGTTTTGAGGAGTACATGACAGCTTTGGCACCAGAAGGTGGAAAGAAGAGTCGAACAAAAGCCTTCAGGATCCCCGGCCTCAGCAAGAGGGACAAGGAGCCAGACTCTACAGACTCAGCTTTGACAGAGACACCGAATTCACCCCTGGAAGTAGACGATGAGGGATTTGTCATCCGAGCTGACAGCACGCACAATGGCTGCTCTGAGGAGAAGGAAAACAACTTTTACTCCAGTGACTCGGACTTCGATGATGAGGAGCCCAAAAAGTTCCACATCCAGATCAGACCGGTGGCCAGCAGTAATCGCAGTAACTCTGCTGCCACAGAGAAAGAGCTGAAAGCCACCGTCGGGGCGCTCACTCTGCCGCCCAACAGAGGCGTCCGGCAAcagGTGTCAGTCAAGTGGCATCTTTCCAGAAACTCAAGTACTGCAGGAGGTCGCTCAGAAGAGGGCGAAGGTGCCTCCCACAGGGATGGAGAGCAGGAGGGCCTACACAGGTCCACCTCCAGTCCTGATCACAGCAGGTTGAGTTCAACAGCGTCCGGTTCAGACAGTCTATTTGGCCCACCGTTAGAATCTGCCTTCAAGTCCAAAAGTTTTGATGGTCGGGAACAACTCCGAGAGCAGAGCGCTTTTGGTGCCTCTGAATatgctGCCTTCTCGTCCGACTCCTCCTCTCCGGAGAACGTTGAAGACTCTGGCCTGGACTCACCTTCCAATCAGCCCCTTGGGCCCTCCCCTGAGCCGGTGGGTTGGGCGGCTTGGCCTCCTGTGTCACAGAGTAaagaacagacacaaacactggGACGACCTGCGGACCCTTTCCTCTCTGCTTTCCGTGACCCCTCTCCTGGTCGGAGTCCTCACCCGCAGGACCCCCCCGCCAGCGTCTGGTCCGTCGCCTCGTCACGTCCCTCTCGTGTCCCCCCAGATATGGACCCCTCATCTCTGCGGTTCCCTGCTTTCTCCCAGTCCCTCCCCCCGCCTGAGATGGAGTCGTCGGTGTGGAACTGCAAACACATTCCCCCCGAGGACCCCTTCCTCGCCGCGTTTGAGAGGACTGTCACCCAGGAGACTTTAAACCTGTCTGACGCCTGGGCGCGTCCTCCGCCTCGGCAAACTCAGGGGGGCAGGGGGATGGAGGTGCGAGGGGACCCATTCTCCATCGCCTTCACTGACACCAAGACACTCCCAACCTCATCCTCCTcgtcctcttcatcctcctctaatcgtaaagacagagacagaaaacgagATCAGAGCCTCCCGCCTCCTCTTACTTCTGATGACCCGTTTGCGATCACAATGATTGGAAGCCCAACGCACCAGTCATCGATGGCTGCAGCAGCTGGGTTGATCCctccacacagcagcagcagcagcagtggaggtggtggtggcTCTACCAATAGCAGTAGGCTGGTACTCAATGCTAATTCAAGCTCTTTGCCCGCAGCTCAGCCCAAGAAGGAGCTGATGCATTGGAACTCTGTCCACAACCCGTTTAGTGAAAGTGTCTTTGGAGTGCTGAGTAGCTCCAAAACacaggaaggaggagggaaaggagagggaggaggaaggaggggggggaggaggaggaggaggaggaggaaacatCGATCATCAGATAGTGAGCCACGCAGGAATGCCCCTCCACTCACGAGGCACTCAGGACCACAGGAGGATCTGTGTTTTTCCACAGATAAAGATCAAGACTGCCTGGATCTGAACACTCCGATATCATGCAGTGTCAGTTCGCACAAGGGGTCCAAACACAACTTCAGACAGGACACAACTGAAGTGGTCACAGCGGCACCACCGAGAGCAACCCGGGCCAAGAGGACTTCAGGCCGACTCAGCACCTGTGAGAGATCCCGGTCTCTGTGCTCCTCCCCACTGCCGGAGCCCAGCCCTtccctcacctcctcctcctcctccagccccAGTGATTGGCCTCAAGCTAGCAGCGACTGGTGGAGTCAGAACCGAGCGCCCAGTCCTGCCAGGGCAGGACAAGCCTCACCGCTGCCCTACCAGCACCAGGACCACCAACAAAGACAGTTGCACCTGTCCCGAGGCCCCAGTCCCATTTCCCTTAGCACACAGGAGGCCTGGCCGGTGGCAGCAGCCATAACAGAATATATCAATGCCTACTTCAAAGGTGGACAACACAACCGCTGCCTTGTGAAGATCACAGGCGACCTGACAATGTCTTTCCCTGCTGGCATCACCCGGATTTTCACAGCCAACCCAAACGTTCCCGTGCTCAGCTTCAGACTCGTCAACATCTCAAAGATCGATCACTTCCTGCCAAATCAGAAGCTGCTCTACAGTGATCCGTCTCAGAGTGACCCAGATACCAGAGACTTCTGGTTCAACATGCAGGCTCTGCAGCTCTACCTGCAGAGAGAGGCTGAACTCAACCCTCAGGCCTCGTACTACAACGTCGGCCTGCTCAAGTATCAGGTGTCGTCTCAGGACCCGGGGCGGGCTCCCCTCCTGCTGTCCGCAGAGTGTCAGCGCAGCGGCACCGTGACCCGGGTGTCCCTGGATTACCACTGTTGCCCTGCCACCGCACCCTCCACCCAGCTTGCCGCTGTCCAGGTGCTGCTGCCATTAGACCACACTGCCACAGACCTGCAGTGCCAGCCACCCGCCTCCTGGAACGCTGAGGAAAGACGGCTGCTGTGGAAACTCCCCAACATCTCCCCGACCAACCACAGCAAAGGCTCAGGTACTCTGTGTGCCAGCTGGCAGTGCCTGGAGGTCCCACGCGGCCCTCCGCCCAGCCTGGCTGTTCAGTTTGTGGGCTCCGGGGCCTCGCTGTCGGGCATGGACGTGGAGCTGGTGGGCAGCCGCTACCGCATGTCGCTGGTCAAAAAGAGATTCGCCACAGGGAAGTACTTGGCCGGCTGCTCTTTGTGAATCGTGTGAAGGACCATCACTGCAGGCTCAGAGAactttgcacttttttttcttcaaccgAGAGTCGGACAGAGGAGAGATGACCGTAGAAAATTGAC

Function

GO: NA

KEGG:

id description
K20042 FCHO; F-BAR domain only protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128475 lncRNA upstream 110417 13968931 ~ 13971139 (+) True G95239
TU128472 lncRNA upstream 126672 13953149 ~ 13954884 (+) True G95236
TU128378 lncRNA upstream 246298 13830850 ~ 13835258 (+) True G95179
TU128376 lncRNA upstream 253075 13825457 ~ 13828481 (+) True G95177
TU128371 lncRNA upstream 257468 13822853 ~ 13824088 (+) False G95173
TU128529 lncRNA downstream 64 14145005 ~ 14145318 (+) True G95287
TU128539 lncRNA downstream 61398 14206339 ~ 14208562 (+) True G95297
TU128541 lncRNA downstream 75630 14220571 ~ 14222594 (+) True G95299
TU128557 lncRNA downstream 113344 14258285 ~ 14263886 (+) False LOC120565959
TU128558 lncRNA downstream 113344 14258285 ~ 14263886 (+) True LOC120565959
XM_039810521.1 mRNA upstream 16006 14034257 ~ 14065550 (+) True tprb
XM_039810523.1 mRNA upstream 16006 14034267 ~ 14065550 (+) False tprb
XM_039810522.1 mRNA upstream 16006 14034267 ~ 14065550 (+) False tprb
XM_039811908.1 mRNA upstream 52697 14024755 ~ 14028859 (+) True pdcb
XM_039811907.1 mRNA upstream 52697 14024756 ~ 14028859 (+) False pdcb
XM_039810666.1 mRNA downstream 28778 14173719 ~ 14203364 (+) True acsbg2
XM_039810665.1 mRNA downstream 34071 14179012 ~ 14203364 (+) False acsbg2
XM_039810667.1 mRNA downstream 34071 14179012 ~ 14203364 (+) False acsbg2
XM_039810217.1 mRNA downstream 200640 14345581 ~ 14361643 (+) True LOC120564948
XM_039810216.1 mRNA downstream 200640 14345581 ~ 14361643 (+) False LOC120564948
XR_005640172.1 other upstream 698812 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 861184 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 981111 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2637023 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2832909 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 474417 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 665427 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 665427 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2175553 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3710696 17855637 ~ 17859152 (+) False nppc

Expression Profile