RNA id: XM_039811714.1


Basic Information

Item Value
RNA id XM_039811714.1
length 1107
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120565732
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 786702 ~ 787874 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCCCTGAACGCACCGTCAAGGTACATTTCTCCTGAACGCACCGTCAAAGTACGTTTCCCCTAACTTCCCTTAAACGCACCATCTAGGTACACTTCCCATAAACGCACCGTCAACGTATGCTTCCCCTTAAACCTACCTGTCTGTTTAACTCACCTGTCCAtaaaggtgtgttcaggtgaggaGGTAGTGTCTGtaaaggtgtgttcaggtgaggaGGTAGTGTCTGtaaaggtgtgttcaggtgaggaGGTAGTGTCTGtaaaggtgtgttcaggtgaggaGTTGATGTCTGtaaaggtgtgttcaggtgaggaGTTGGTGTCTGtaaaggtgtgttcaggtgaggaGGTAGTGTCTGtaaaggtgtgttcaggtgatgaGTTGATGTCTTTAAAGGTGTGCTCAGGTGAGGAGTTGGTGTCTGtaaaggtgtgttcaggtgaggaGGTAGTGTCTGtaaaggtgtgttcaggtgaggaGGTAGTGTCTGtaaaggtgtgttcaggtgaggaGTTGGTGTCTGTAAAGGTGTGTACAGGTGAGGAGTTGGTGTCTGtaaaggtgtgttcaggtgaggaGTTGGTGTCTGtaaaggtgtgttcaggtgaggaGTTGGTATGCGtaaaggtgtgttcaggtgaggaGTTGGTATGTGtaaaggtgtgttcaggtgatgaGTTGTTGTCTGtaaaggtgtgttcaggtgatgaGTTGGTGTCTGtaaaggtgtgttcaggtgatgaGTTGTTGTCTGTAAAGGTGTGTTCGGGTGAGGAGTTGGTGTCTGtaaaggtgtgttcaggtgaggaGGTAGTGTCCGtaaaggtgtgttcaggtgaggaGTTGGTGTCTGtaaaggtgtgttcaggtgaagaGGTAGTGTCCGTAAAGgtgtgttcaggttAGTGCAGGTCTGTACATCTCacataaaacagaaagaaagcgaTTCAGACAGCAGCTCTGATTTGTCGACAGCAGACATCCACAGTGTCTTCAGTCAACATTAAACAGCTTCGCTTCACTTGTGGTTACTCTATGTGCTGATCTGCTATTGGCAGATTTGGTTTAAAacgatctgattggctgctgactgtttctgtttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123857 lncRNA upstream 12745 722115 ~ 773957 (+) False G92018
TU123874 lncRNA downstream 28708 816582 ~ 818325 (+) True G92027
TU123876 lncRNA downstream 36700 824574 ~ 826046 (+) True G92029
TU123920 lncRNA downstream 72599 860473 ~ 860703 (+) True G92062
TU123926 lncRNA downstream 112347 900221 ~ 940759 (+) False G92066
TU123924 lncRNA downstream 135423 923297 ~ 984045 (+) False G92066
XM_039811808.1 mRNA upstream 627245 141925 ~ 159457 (+) True LOC120565788
XM_039811564.1 mRNA downstream 44367 832241 ~ 854498 (+) True wdr18
XM_039811565.1 mRNA downstream 98485 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA downstream 103704 891578 ~ 955236 (+) False grin3bb
XM_039812306.1 mRNA downstream 195777 983651 ~ 1009213 (+) True med16
XM_039811799.1 mRNA downstream 222873 1010747 ~ 1025143 (+) True plppr3b
TU123859 other upstream 27726 722373 ~ 758976 (+) True G92019
TU123860 other upstream 27726 755595 ~ 758976 (+) False G92019
TU123696 other upstream 192825 580807 ~ 593877 (+) True G91903
TU123666 other upstream 220236 509141 ~ 566466 (+) False G91887
TU124034 other downstream 380947 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 415013 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 432936 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 433499 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 453513 1241387 ~ 1256194 (+) True G92169

Expression Profile