RNA id: XM_039811755.1


Basic Information

Item Value
RNA id XM_039811755.1
length 5001
RNA type mRNA
GC content 0.48
exon number 22
gene id lepr
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13211481 ~ 13258561 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTACTGCAAATGTTCAGGATATCAGCTGGAAGGAAAACTTTATTTCCCATGGTATACTTAAGACTTCAGGTCTGATTGTGCGGAGCAGCTGATTCAGAAATGGACGGTGAACTCTGACAGAAGCGCACACATCTTCTTCACTGAGGATTTTGGACGAACTCACCTGCCCGAACAAAAACTGGACACGAAACCAGAAGAAACTTCCAGGAGCGATtGAGATTCACCACAGCCAAAGCCCAGCAAGGCCATTCTCATGCTATGACAACTAAGATGGTTCGGTCTGTGATGTTGGCAGTCCTGATCCACATATTTCTAGTATCGCATGGTGCTCAGTGTTTGGAGCCGGAGGAGGGAGCCTCTCTCTATTCACGTGCCCTGAACCTCCCGTGGCAGGATGAGCTGTGCTGTGACTCACCTTCAGCCCACCTCACTGTGGAGCGAGACACGCATGCACCGGAGACAAATCGCTCTGAATCAAACCTCCTACACTATCCCCTCTGCAGCTTCAGGAGCTCGACAACCGAATCACACCCTCATGAGCCCTCTGGCGGCACCTGTTTGGACATACTGTGCAGAATTGAGGAAAATTGGGGAAATTTAACATGTGACCTTCAGTCTCTCGGTCCACCATCTACCACCCTGGATTCTGGTCTCATGACAGTTAGTTTACAGCGTCTGGTTTCCCAGAAAGACGACACAGAGCTGAAGGATGGGAATACTGCACCTGATAATCCTGTTGTCTGTGAGGCAGAGGATTTCTTTATGTGTTCAGTCGCTCTGGATGTTACAACAAGCTTTGTCATCATGGTAATTGTCAGCATCTCTAATGCCGTTGCTCCACCAGTTCTTCTCAGGATTCCTGCCCGACCTGTGAAACCAAGTCCTCCAGTCAACCTGTCACATATCCAGACCATTGAGGCAGAACTGATTTTACAGTGGGACAACCCACCAGACTTTGATACCGGTCCACTAAGATACGAAGTCCGACTCTCTTCCAATACCACTCATCCGGCCTGGCAGGTGGTGTCTGCTCCTAGAGAGCCCAGGTTGTCTCTGGAGCTGAAGCCCAGATTGAAGTACATCACCCAGGTTCGCTGCTCCTGCCTGGACAAGCCTTCACTGTGGAGCGAGTGGAGTGAACCTTACCGCATCCACCTGGACGaggtgAGCTACATCCCTGAGGAAGTGGTGGCGCGACCGGGTGAGAACGTAACGGTGTATTGCGTGTTCAACGACCACAGCATCAACGCCAGCACGGCCATGTGGATGCTCAACCTCCAACAGCAGCTTCCTCGCAGTCAGTACCACGCAGTCAACCAATggGTCAGCCAGATCACAGTGCGTCCTTCAGAGACTCGGTACGACCTGTACAACCTGCTGCGGTGCACTCAGGAGTGGACCATCCCGTACAGCCAGATCTATGTAGAAGGAGTCTCCATCGATATAAACTGTGAAACCAACGGTAATATCGATGCTATGAAGTGCAGCTGGAACAACCCGAAGTGGAGTAAACACAAATTCAGATCCAGGTGGGCTGACCTGCCATGTGATGTGATGGAGGAGAGGGAACGAGCCGGGGTGGAAGTGGGGGAGATGGGGCCCGCTTGCCTGCAGGACAGATCCAAGCAGAAAACCTCCTGCACCATCAAGCCTTTGAGGATGAACTGCTACAAGCTGTGGCTTGAGTTGCCATCCCCACTGGGCCCCATCAGTTCTAAACCCATCTACCTGTTGCCCATAGATCATGTGAAACCCCACACACCCACTAATGTAAAGGCAGTGAGCCAGAGCAATGGAGTCCTGATGGTTACATGGGAGCCTCCGTCTCTGCCAGTCGAGGGGCTCCAGTGTCAGTTTCAGTACCACTTAACCTCTGCTGTGAGACAGTGGAAGGTCCACAGTCCAGTGCGGGTGCAGTGGGCGAAGACCGCAGTGTCAGCCATGTGCCAGGAGTATGTGGTACAAGTACGCTGTATGCCCACCAGCGGTACCGGCTACTGGAGCGAATGGAGCGACTCGGTCTACTCCACGCCTCAGAACAGCAGAGCTCCTGAGCATGGCCCTGATTTCTGGAGAATCCTTCAAGATGATCCATACAGAAACCAGACTAATGTCACTCTGCTATTTGAGCATCTCCAAATATCAGGGCGCTCTTACTGTGTTGATGGATTTATAGTCCAGTACAAGGCCTTGAGTGGCTCTGTGATAAGGGAGAAGATCGACCGGGTGTCCTCCTACACATTTGAGTGGAACCTGGTGCCCCAAACTGTGACTGTGGAGGCCTACAATAATCTGGGAAGGTCCACTAACAACATCAACATGACGCTGGAGAGACAGCCCAAACGCCGCTGTGTGCATTCGTTCAGTGTGTTGGTTGTCAACAgcacctgtgtgtctctgtcctggAGTCTGCTGGACAACAGCTATGTGCCTCTGTTCATGGTGGTCCAGTGGTCTCCACAGAGGCAACAGGACTCTGATTATCACAACGGCAGGAGTGGAAAAACATGGGCCAGACTTCCCTACACCGACCACCCTATCTATCTGAGAGGTGATTTCTTAGGCTCTGAGGAGTGTGGCTTCTACTTGTACCCTGTGTTTGCTGATGGTGAAGGGGAGCCAATGTATGCCATAGCCACCAGCGGAGACCCTGCAGCCTACATGATGTTGATGATCatctccttcctcttcatcgTCTTGTTCGTCACCCTGATCCTCTCCCAAAACCAGATGAAAAGGTTTGTGTGGAAGGATGTTCCCAACCCAAACAAGTGCTCCTGGGCCAAAGGACTAGATTTCAaacagGCTGACAGCTTTGACCACCTGTTCATACCTCGAGAGGGCCTTTCAGCCTGGCCACTGCTCCTGCCATCTGAGAACATTTCTGAAGTCGTCATAGGGGACAAGTTCGACCTAGGAGCTCTGTCTACAGCTTTAGTCCAAGCCCCACTTGTGTCCCTAACTCCTGACCCAGCCACTGCCTTATCTATCTCTATTCCTTCAGGGTTTAACTCCGAGGTCGACCAAGACCAACCCATGGAGAGTGAGGTGCTCCAAGGTAGAGCTTCCTTAGCGCTTAATCTGGATGCAATAACCAGTACACTCCCAAGGATAGATCTGTTACCGCTAGTTGATCCCCCAGGAGACCAGCCTCCAGGCACCACTGACAGCTCTGCTCAGTCTTCAGTCACATATGCCACTGTGCTGCTGTCTGGTCTGAAGCAGGAGCAGCAGCCCATTCATCTCCACTACAAGGATGGTAGTGGCAGCAGCTCCAGCGACGAGGGCAATTTCTCTGCCAACAACTCAGACATTTCTGGATCTTTCCCCTGCGGCCTGTGGGAGCTGGACAGCTGCCGAGGTGGAGGGATGGACGACCCGCAGCGCCCCTGCTCCTACAACTCTGTGGAGAAGCTTTCTGAAACATCAgagcaagaagaagaagaacacgtgACGAGAGAAGGGAAGGACTTGTATTATCTAGGAATGAACTATCCGGCGGAGGATGAGGAGAGCGAGGATGAGGAGAGCGAGGAAGACAAggagcagagaaaagaggaaaccaaaaTTGAGCTGCTTAAAAATGTAGTTTTGAACTTAGAGGACTGTTCTGTGGAGTCGCACCCTTTGCTGGGCCCTGAGGACTCGAGCGAGCTGCTGTCAGCCTCAACACATAGCTTTTCTCCGCTGTACCTGCCTCAGTTCAGAACTGCTCCGTGCACGAGGCAAGTCACAGCTCAGCCACATGACTGCAAACCCCAGCTGTGACTCTACACAGActgcattaaaataaaatatgcacCTTTTTACATCCGTCATGTCATCGACTGCGTCATGATTCAGCATTTACCAAAGCAGATTTGCATGCAGCGGATGTTCCTTCAGACACAGTGAGGTgtggagctaaaaaaaaacaacagaaaactaCCTTGACTAATGTGTGATTGCAAATTGACATTCATCAATGCTGCTATTGTGTTCTCTGTGAGAAAAGACGTCAAGGGTGCACCAGCCTCAGCTAtgacctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttcatggGACTTTGAAATCCAGATTCTACTGTGCCACATTGCTCCTCTGCACTCGTTTCCTGATGCAGGACTACCTGCTGaggaaaatgaacttttttaatGGAGTTTAGGCTAGTGGAATTCTGTACAGTTCTCACAGAGAACAGCAGACCGACTGTAAGCAGTACACTGGTAATCAGGAAGAGAGTAATGGAGGTTGTAGTCATCTTTTGGCTTTAAACATCCTATACATACAGCATATTTCACAGGTGGTTCTACATTAGATGTTGTATGTGTGCATATAGTAAATTTACTCATCTGCTGCTTCTGTAATGTGACGTGACTTTCATTCTCTAATGCTGAATTATTTCAACTACATTTTTAGTGAAACATGTAAGAGGTTCAAAGAGAATAAAGAAACGCTCAGAAAGTGAAAGAGAATAATAACCCATAACCTGGACAGTTTCGGTTTCCTTAAAAGCACATAAGACTGTGAAGTGAAGGCAAACCTTGGATGTCACTTTAAAGCTACTGTTGTGACTAAATGAAATGCAGGTTAACAATAAAAAACAGATGTAGTCTGTGAGTAATTGCAGGTGATTTTTGGTCACATAATTTACTGTACTTGTAATCAGGCTGTGCAACAACATCTGCATGCATTAACTCACCCCACCAACCAAAAGAATGTCTTTTTGTACTTTGTGCTGTAATGTATTTGAGAAATGTGATCTCTATTTTTTCTGTTTGGCCAATAACACCTGCTGTCTGGTGTtaataaaagacaaaagaatGTACCTTTGAAACCAGAGGAGGACAGAAATGATAAGTAATGAAAATATCGGTTGACATTAAATATTATTGTATATTGAGATATGTTGTCTATTTTTCATGGTTGAAATAAAGTGTTTATCGTGA

Function

GO:

id name namespace
GO:0007423 sensory organ development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128185 lncRNA upstream 64686 13146305 ~ 13146795 (+) True G95040
TU128168 lncRNA upstream 99161 13107689 ~ 13112320 (+) True G95027
TU128143 lncRNA upstream 111143 13098787 ~ 13100338 (+) False raver2
TU128141 lncRNA upstream 215827 12995235 ~ 12995654 (+) True G95002
TU128136 lncRNA upstream 345230 12865912 ~ 12866251 (+) True G94997
TU128265 lncRNA downstream 77173 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA downstream 77173 13335734 ~ 13342098 (+) False LOC120565776
TU128278 lncRNA downstream 113883 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA downstream 113912 13372473 ~ 13374348 (+) False LOC120564967
TU128288 lncRNA downstream 132262 13390823 ~ 13399617 (+) False LOC120564965
XM_039811402.1 mRNA upstream 7112 13163705 ~ 13204369 (+) True dnajc6
XM_039811401.1 mRNA upstream 7112 13163705 ~ 13204369 (+) False dnajc6
XM_039811400.1 mRNA upstream 7112 13163705 ~ 13204369 (+) False dnajc6
XM_039811397.1 mRNA upstream 7112 13168571 ~ 13204369 (+) False dnajc6
XM_039811396.1 mRNA upstream 7112 13168572 ~ 13204369 (+) False dnajc6
XM_039811888.1 mRNA downstream 35305 13293866 ~ 13305234 (+) True ttc22
XM_039811887.1 mRNA downstream 41924 13300485 ~ 13305234 (+) False ttc22
XM_039811889.1 mRNA downstream 41924 13300485 ~ 13305234 (+) False ttc22
XM_039811998.1 mRNA downstream 59215 13317776 ~ 13320697 (+) True LOC120565891
XM_039810377.1 mRNA downstream 70056 13328617 ~ 13335098 (+) True LOC120565057
XR_005640174.1 other upstream 111036 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1766948 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1962834 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2263235 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 2270237 10916925 ~ 10941244 (+) True G94598
XR_005640172.1 other downstream 120837 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1360797 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1551807 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1551807 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 3061933 16320494 ~ 16341048 (+) False kdm4b

Expression Profile