RNA id: XM_039811756.1


Basic Information

Item Value
RNA id XM_039811756.1
length 2114
RNA type mRNA
GC content 0.54
exon number 3
gene id enc3
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21577394 ~ 21592150 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGTAGGAGGAGCCAGTGGGAACGCCACGGCTGCCTCTGCTCTTTCTCTCCGCTCAGCTCGTCGCTCTCTCTGCTGCAGGCTGCGTGGCTTCCCGAGAACACACCGAGCTACTAACTTTTTAACATTGTTTGGGCTTTTTTACGCGTTTATTAAACTCGAAGCTCGCGACGCAGACAAATGGCTCAACCGTTTCCCAACACTTTAGGTTGTGGTACAGTTTTAAACTCGGAAAGCGGATTTGTCTAAATTGTGTCACAACTTCAAACAAATCCACGACGGAACAAGTTGGAACCGAGATAAAGGAATCCGGATCTGCTTTGCGCCTATCAAGGTCCAAGTCAAGATGTCTGTCAGTAACCACGAAAACAGAAAGTCTCGCTCTAGTTCTGGCTCAATGAATATCCAACTCTTCCATAAGACGTCCCATGCAGACAGCCTGTTGACTCAGCTCAACCTGTTACGCAAACGAAAAATCTTCACAGATGTCATCCTGAAGGCCGGAAATAGATCCTTCCCCTGCCACCGGGCCGTCCTGGCCTCCTGTAGCCGATACTTTGAAGCCATGTTTAGTGGCGGGCTCAGGGAGAGTCGTGACGCCGAAGTCAACTTCAAAGACTCTCTCCATCCAGAGGTGCTGGAGCTCTTGCTCGACTACGCCTATTCAGCCCGAATCCTCATTAACGAGGAAAATGCGGAGTCGCTCCTGGAAGCCGGCGACATGCTTCAGTTTCACGACATCAGGGACGCAGCAGCAGAGTTTCTAGAAAAGAACCTCCACCACTCAAACTGTCTGGGGATGATGCTGCTGTCAGACGCCCACCAGTGCCAGAGACTGTACGAGTTGTCGTGGAGGATGTGCCTGGCGAACTTTGCTACTCTCTTCAGGACTGAGGACTTCCTCAGCCTACCCAGAGACAAATTCCAGGAACTGATCCTCAGCGAGGAACTGGAGGTGGAGGATGAGAGCCTGGTGTACGAGGCTGTTATCGACTGGGTCAAGGCCGACATGGAGCACAGGCACAGCGAGCTGCCGGAGCTGCTGCGTTGTGTCCGCCTGGCGCTGCTCCCTGAAACGTACCTGCTGAAGAACGTTGCTTCAGAGGAGCTGGTGATGTGCCATAAGGTGGGCCGAGAGATCGTCGAAGATGCCGTACGGTGCAAAATGAGGATCCTCCAGAATGACGGTATTGTAACGGGGTTCTGTGCCCGGCCGAGGAAGGTTAGCCaggccctgctgctgctgggaggaCAGACTTTCATGTGCGATAAAGTCTACATGATCGACAACAAGACAAAGGAGATCACCCCCAAAACAGACATCCCCAGCCCCAGGAAAGAATGCAGCGCCTGTGCTATTGGTTGCAAGGTTTATGTTACTGGAGGACGTGGCTCTGAAAACGGGGCCTCCAAAGATGTCTGGGTCTACGACACATTACATGACGAGTGGTCCAAAGCTTCACCTATGCTGGTAGCCAGATTCGGACACGGGTCTGCGGAGCTCGACCACATGCTGTATGTTGTGGGAGGACACACTTCTCTTGCAGGATCTTTCCCTGCATCTCCATCGGTGTCTCTCAAACAGGTGGAACAGTACGACCCTCAGACCAATAAATGGACCCTGGTGGCTCCGCTCAGAGAGGGGGTGAGCAACGCTGCTGTCGTCGGGGCCAAAAACAAGCTCTTTGCCTTTGGGGGCACCTGTGTGAACAGAGACAAATACCCCAAGGTACAGTGCTTTGACCCCTGCCAGAACCGTTGGTCCGTGCCCGCGTCCTGTCCACAGCTGTGGCGCTACACCGCAGCGGCCGTGGTTGGTAACCACGTTGTGGTGATCGGAGGCGACACTGAATTCTCAGCCAGCTCTGCTTACCGGTTCAACAGTGAGACGTACCAGTGGTCAAAGTTTGGCGACGTGACAGCCAAACGGATCAGCTGCCATGCAGTGGCGTCAGGAAACAGACTATATGTGGTTGGGGGGTACTTTGGGGCTCAGAGGTGTAAGACACTAGACTGTTATGATCCATCATCGGACTCCTGGGACAGTGTGACCAGTGTGCCCTACTCACTCATTCCCACTGCCTTCGTCAGCACATGGAAGTACCTCTCAGCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130979 lncRNA upstream 19663 21554953 ~ 21557731 (+) True lsm7
TU130980 lncRNA upstream 19663 21554953 ~ 21557731 (+) False lsm7
TU130923 lncRNA upstream 120594 21368118 ~ 21456800 (+) True G97009
TU131003 lncRNA downstream 77706 21658550 ~ 21676349 (+) True G97064
TU131004 lncRNA downstream 77706 21658550 ~ 21676349 (+) False G97064
TU131039 lncRNA downstream 162569 21743413 ~ 21744681 (+) True G97096
TU131133 lncRNA downstream 360261 21941105 ~ 21942404 (+) True G97170
TU131132 lncRNA downstream 362121 21942965 ~ 21944561 (+) False G97170
XM_039810656.1 mRNA upstream 5595 21559203 ~ 21571799 (+) True tmprss9
XM_039810655.1 mRNA upstream 19668 21554894 ~ 21557726 (+) False lsm7
XM_039810654.1 mRNA upstream 25140 21539227 ~ 21552254 (+) False LOC120565175
XM_039810653.1 mRNA upstream 25140 21539331 ~ 21552254 (+) False LOC120565175
XM_039810652.1 mRNA upstream 25140 21540199 ~ 21552254 (+) True LOC120565175
XM_039810145.1 mRNA downstream 270198 21851042 ~ 21853412 (+) True s1pr4
XM_039810498.1 mRNA downstream 314626 21895470 ~ 21909198 (+) True ncln
XM_039810501.1 mRNA downstream 314626 21895470 ~ 21909198 (+) False ncln
XM_039810503.1 mRNA downstream 314626 21895470 ~ 21909198 (+) False ncln
XM_039810500.1 mRNA downstream 314626 21895470 ~ 21909198 (+) False ncln
TU130185 other upstream 2045717 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 2791758 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 3704983 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 3705547 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 3708592 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 110053 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 702802 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 904667 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 912113 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 991215 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile