RNA id: XM_039811774.1


Basic Information

Item Value
RNA id XM_039811774.1
length 1657
RNA type mRNA
GC content 0.45
exon number 6
gene id ak4
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13149850 ~ 13158641 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGGGCGTTGTGGAGACACCCTCCTCATTCATTCGCAGAGAAAAGTCTTTGTCCGAAAATACGTAGACGGGTGTAATGTATCCTTAAGCGAccgaaagaaaaaaaggaaaagggcgTTTTGACTTGATCCAAGTCATAGAGCGAGGATAGCCCCAATATGCGCAGAGAGTGGGCTCTGTGTAGACAACCGCAGACTCCAAAGAGAAGCTGAAATCTACATTGGCAACTACAACTTTCAAAGCCATTCAGTTTTTGGACCACTTTGATCGCTCATGCACCCAACTAACTaggggttttaaaaaaaagaggtttGTGCGCTTTCCCTAGCGCACAAAGAGGACAAACTAACATTTGTGCATCCCAGAGGTTTTAAAGTTGCAGTCTGTGTTTGAGGAAGACATGGCCAAGTTATTCCGAGCTGCTATCATGGGACCACCAGGATCAGGAAAAGGAACGATATCCCAGAGGATTGCCCAAAGCTTTGGCCTGCAATATCTGTCCAGTGGCCACTACCTACGAGAGAGCATAGCGGCAAACACAGAGGCAGGTGTGCTGGTGAGGACCTATGTAGAAAGAAGCATGCTGGTGCCTGACCATGTGATGACAAGACTGATGCTGCCCAGACTGGAACACCTGATCGGCCACAGCTGGCTGCTGGACGGTTTTCCCCGGACTCTGTCGCAGGCCCAAGCCCTGAGCAATTTGTGTCAGCTGGACCTGGTCATCAGCCTCAACATCCCCTATGAGACTCTGAAGGAGAGACTGAGCGACCGCTGGATCCATCCAGTCAGTGGCCGAGTCTACAACATGGGCTTCAACCCGCCACGAGTGCAGGGTAAGGATGACATCACTGGGGAGCCACTGATTCAACACGATGATGACAAACCAGAAGCCCTGATGGCCAGACTGAGACACTACAAAGATGTGGCCAAGCCGGTCATAAACTTATACAAGTCACAGGGAATCCTGCACTCATTTTCCGGTACAGATACGGACCGGATTTGGCCTTATATTAACTCCCTCCTCAGCACCAAGATGCACATGCAGCCATCAGATTTCTTCCAAACCCAAACACCCTGACACTTTTCTGAATGAAAAGATCACAGGACAATTTACTGGGCTGGTGCTGGACTTGTACAAGACTCAAGAATCCCTCACAATCACTCTACAGCAAACTCTGGCTGGGATGAAGACCAATGCACAGAATATAGTGCCTTCAATGCTGTTACTTTCCTAAGGTTGCCTTGAAATTTTAATCTTcaaaatgtcaaagattgttgtttataaaatgtaatgttttgcagTGTTTGTTTAACTTTAAGATATTGCTGGATATAACTTTAGTAAGTAATAGGATTTGGAAGCAGAACAAGGTCATATATGTAAAGGTCTTATTTTGAGGTTTGTTTGAATGTAGAAAGCACTGCTGCAGGGTGAACAGCTTGTAAAATGTTAACCTTGtagattttttatatttttttgtaagtgattttttttctgaatgtttGATTTTAGTTCCCACCCTACAGTATAGCTTCTGGTCACCTGAAGTTAAAAGAAGGGTGTCATATTTTCACCCAATGGCACAGGAGTTTGCTTTTGGCAATCACATAAGCACACCAGTACCTAACTTGTGCAATAAAGACCAACAACTggg

Function

GO:

id name namespace
GO:0046939 nucleotide phosphorylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0004017 adenylate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128185 lncRNA upstream 3055 13146305 ~ 13146795 (+) True G95040
TU128168 lncRNA upstream 37530 13107689 ~ 13112320 (+) True G95027
TU128143 lncRNA upstream 49512 13098787 ~ 13100338 (+) False raver2
TU128141 lncRNA upstream 154196 12995235 ~ 12995654 (+) True G95002
TU128136 lncRNA upstream 283599 12865912 ~ 12866251 (+) True G94997
TU128265 lncRNA downstream 177093 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA downstream 177093 13335734 ~ 13342098 (+) False LOC120565776
TU128278 lncRNA downstream 213803 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA downstream 213832 13372473 ~ 13374348 (+) False LOC120564967
TU128288 lncRNA downstream 232182 13390823 ~ 13399617 (+) False LOC120564965
XM_039810256.1 mRNA upstream 54444 13005568 ~ 13095406 (+) False raver2
XM_039811947.1 mRNA upstream 155086 12896287 ~ 12994764 (+) True cachd1
XM_039811948.1 mRNA upstream 155086 12937290 ~ 12994764 (+) False cachd1
XM_039812265.1 mRNA upstream 284008 12742805 ~ 12865842 (+) True ror1
XM_039811402.1 mRNA downstream 5064 13163705 ~ 13204369 (+) True dnajc6
XM_039811401.1 mRNA downstream 5064 13163705 ~ 13204369 (+) False dnajc6
XM_039811400.1 mRNA downstream 5064 13163705 ~ 13204369 (+) False dnajc6
XM_039811397.1 mRNA downstream 9930 13168571 ~ 13204369 (+) False dnajc6
XM_039811396.1 mRNA downstream 9931 13168572 ~ 13204369 (+) False dnajc6
XR_005640174.1 other upstream 49405 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1705317 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1901203 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2201604 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 2208606 10916925 ~ 10941244 (+) True G94598
TU128204 other downstream 14384 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 220757 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1460717 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1651727 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1651727 14810368 ~ 14914033 (+) False dennd1b

Expression Profile