RNA id: XM_039811799.1


Basic Information

Item Value
RNA id XM_039811799.1
length 2820
RNA type mRNA
GC content 0.61
exon number 12
gene id plppr3b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1010747 ~ 1025143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacacacacacacacacaccgtgcagcagcagcagcagccgcagaTCTCCGCCAGAAAACGGTTGCAGATCTGCGTTATTTCAGGCAGAACGAAGCCTAGAACCGGGGAAAACGGAACCAGGACGGGGACTAGCCTAAAACCGAGCCGCTGTAACCCGGGACAACCAGGCAGGTGTGTCCGGTGTCACGGCTCCGGTACCGGCTCCGGTTCTGCTgctgaagaggaagagaaacgGGAATCAAAGCGGAACAGACACAGGATCGATGGTCtgaggtcTGTCAGGATGATGATGAACTCtgagaagatgaagaagaaaccTCCCAAAGACAGTTTGACTCTGCTGCCATGTTTCTACTTCGTGGAGCTTCCCATCGTGGCGTCCTCCATGGTGTCTCTCTACTTCCTGGAGCTGACCGACGTGGTGCAGCCGGCTCAGGTGGCGTTCCGCTGCCACGACCGCGAGCTCAGCATGCCGTACGTAGATGCTGGAGACGAGCTCATCCCTCTGCTGATGCTGCTCAGCCTCGCCTTCGCTGGGCCGGCTGCCtcgATCATGCTGGTGGAGGGGGTGATCTACTGCCTGCAGTCCAGACTGAAGCTGCGTCGAGCCGAGGGGAGCATCAACGCTGGGGGGTGCAACTTCAACTCCTTCCTCAGGAGGACTGTTCGCTTCGTAGgcgtgCACGTGTTCGGCCTGTGTGCGACAGCGCTGCTGACAGACATCATCCAGCTGTCGACCGGCTACCACGCTCCGTTCTTCCTCACCGTGTGTAAACCCAACTACACGCTGGCCGCCGCGTCCTGCGCCAGCAACGCCTACATCACCAGAGACATCTGCTCGGGGCACGACCTGCACGCCATCATGGCCGCcagGAAAACATTCCCTTCCCAGCATGCAACGCTGTCGGCCTTCGCTGCTGTTTATGTTTCTATGTACTTTAACTCGAGCATCTCTGACAGCACCAAGCTGCTGAAGCCCCTGCTCGTGTTTGCCTTCGCCATCGCTGCGGCGATGAGTGGGCTGACGCAGATCACGCAGCACCGCAGCCATCCCATAGACGTCTACGCAGGCTTCCTGATCGGAGCCTTCATCGCCGCCTACCTGGCGTTTCACGCTGTGGGTAACTTCAAGTCCTCTGAGGACATCACTGCGGCCCCAACCCCCCCACCTCCGAAGGAGGATGCCCTGCGGGCGCTGACGGAGCGAGGACACGAGTCTGTCTACAACAAAGGACCGGCCTCCGCCTCCGAGAGCAACGACGAGATAGCCGCTGTGCCCGCGCCGCTGCTGGACCGTCTGGAGGGGTCTCTGGGGGGGCCGCTGCAGAGGGAGACGGACTCCATGGAGACCCTGAAGAGAGCCAGCGTGGACGTGGAGCTGCTCGCTCCTCGCAGCCCGATGGGGAAGGAAACCATGCTGACCTTCAGCAACACGCTGCCCAGAGCCAGCGCCAACGCCAACACCAACGGGGGGGTGCTGGGGTCCAGCCCACCGCCGGAGGACCCTCCGGTGCAGCCGGTTCAGCCGGTGCAGCGGCGTCTGAAGGCGGTGCCGGGCCCCGTGGACCCGCTGCGCTCGCAGCAGTTGGTGTCGGAGTGGAAGCAGAAGTCGATGGAGATGCGCGGACTGAGCGTGCACGGCGAGGCGGAGCGCGACGCCAGCGAGGACGGCTCCGTGGGGGCAGACGAGGTCTTCCATCCCGCGGTGCATTCTGGGAGGCCAGCGTCCGCTCGCAACCCAACTCCGCCTCCGGGCGGTGCCAAAGCTGTGGCCACTCCACGCCCGCCGCAGATCCCAGAGGCAGGGCCACCGCCCGTGTCCCCAAAGAGCGCCGTGACCCGCGCCAAGTGGCTCGCCATTCGGGAGAAGGCGAGCGGCGAGGGCACAGCCCGCAGCACCGCCAACACGCCCAGACTCATGCAGGTGGTTTCCATGGTGAAGCAGCATGGCATCCGTGCGGCGTCCTCAGAGACCTCCAGCTGCTCCGGCTCCTCCTCGGCCGCCGAGTCCCCGCAGCAGCGTGGTGGGATCGTCACCGTGGACGCCCACGCCCCTCACCACCCGGTGGTCCAGGCCCCGCCCCCTCTacaggccacgccccctctACAGGCCCCGCCCCTGGCCGGGAACGGGAGCCCGTGGGAGTGGGCGTCCGACGGCCGTGACCCGCGGGACGCCTACGACCTGAACAGCCTGACCCGCGGCGACTCAGCGGCGCGTGGCAGCAGCTTCCGGCCGCACCGCTCCGCCTCGCCGCGCGCCGTGGGCGGGGGGGCCACGACTCACGGCGAGGCCGAGGCGACAGCGGACGCTCAGCGCCGAGAGATCGCCATGAGACGCAAGACGGCGCTGGTTCTGTTGGATCGAGAGCTGCGTGCACAGGCGGAGCAGGAGAACCTTTATCTGCAGGGACGCAGGTTCAAGGACTAGTCTCAgaacctttcaaaataaaatagtctctgaaactttcaaaataaaatagccTCTgaacctttcaaaataaaagccttatTGTGAAAGTGACAGCGCAGACGGGCACAGCGAGGAACGCCGACTGGCGGGGTGCGCCATTGATTCTGATTGGATATCAGTTGGTTAAGGAAACTTcagtttattataaataaacatCAGTTTATCTTGGATGTAAAAGAACTTCTGCTGTAAAACGTGTTTGGTAGTAAACGGAGAGACCTGATGAATTATCTtttaacacttgtgttgtcttcccgtcgaccattaACTTTTTGTCCTtatgggtcaaaattttaaatgaatttttaacttttttgttgcttttttcaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19582 LPPR3_4; lipid phosphate phosphatase-related protein type 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123924 lncRNA upstream 26702 923297 ~ 984045 (+) False G92066
TU123971 lncRNA upstream 39226 970873 ~ 971521 (+) True G92095
TU123969 lncRNA upstream 40835 968991 ~ 969912 (+) True G92094
TU123968 lncRNA upstream 45097 964768 ~ 965650 (+) True G92093
TU123925 lncRNA upstream 63034 923297 ~ 947713 (+) True G92066
TU123991 lncRNA downstream 20520 1045663 ~ 1046099 (+) True G92109
TU123999 lncRNA downstream 22393 1047536 ~ 1062632 (+) False G92111
TU123998 lncRNA downstream 25060 1050203 ~ 1062632 (+) True G92111
TU123945 lncRNA downstream 78049 1103192 ~ 1301580 (+) False G92071
TU123953 lncRNA downstream 81006 1106149 ~ 1129822 (+) True G92078
XM_039812306.1 mRNA upstream 1534 983651 ~ 1009213 (+) True med16
XM_039811565.1 mRNA upstream 55511 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 55511 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 156249 832241 ~ 854498 (+) True wdr18
XM_039811715.1 mRNA upstream 222873 786702 ~ 787874 (+) False LOC120565732
XM_039811451.1 mRNA downstream 197190 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 297262 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 512856 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 600431 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 610820 1635963 ~ 1637498 (+) True sid1
TU123859 other upstream 251771 722373 ~ 758976 (+) True G92019
TU123860 other upstream 251771 755595 ~ 758976 (+) False G92019
TU123696 other upstream 416870 580807 ~ 593877 (+) True G91903
TU123666 other upstream 444281 509141 ~ 566466 (+) False G91887
TU124034 other downstream 143678 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 177744 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 195667 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 196230 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 216244 1241387 ~ 1256194 (+) True G92169

Expression Profile