RNA id: XM_039811888.1


Basic Information

Item Value
RNA id XM_039811888.1
length 2464
RNA type mRNA
GC content 0.48
exon number 9
gene id ttc22
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13293866 ~ 13305234 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATGACAGCGACCAGCAGCCGCAGagtgggagaggagaggagacccCAGACTGTCAAGTCAGCTGCAATAACATCGTAGAGCTTCCGATacgactttcaaaataaaatacgcATAAAGGAACACCAGGTGGAGAGAAGGAGCAGAAGGCCATGGAGGCAGACAGCAAAGAGGACATTGAGTCTCTCATGGAGGACATGGACTACATCCCTGGCCACTTCCACCTGGACCTCAACCTTAACTGTGATCCTGTTGGGCCTATGAAGCTAAGACTCAGGGACACTTACCTAAAACAAGAGAGCCTGCGAGGTGAGCTAGAGGCTGAAGCTGGATATCTACAGTACGCCGTTCGAAATCTGCTGGGTCTGCTGGCTTTTCACCTGGAACACTTGGACACAGCTGAAGAAATATTCAGAAGCATCTGTAAAGAAGACCCTGGGAACCTCAATGCCTGGGCCAACCTGGGCTACGTGTACGACAAGCTGGGGAGAGAGCTTGATGCAGGCGAGTGTGTGGAGAAAGTTTCCTACCTTATGGGCTTAGACGGTGGAGAGGCCTCACAGGAAGAGACCAGGATCCTGGCGGCCCGCTGCCTGGCTGAGCAGGCTTACGTTTATCCCTACGATGTGGAGCTGAACAGTGAGGACGacctgagagacagactgaCGGCAGCATTGACACTATACAACAGAGCCCTGGACTATGGGGGTCAGCTGctACCAGTAGAGGAAAAACGAAGCTGGTCTTTTAAAATGGCAACCATCTATATAAGACTGGACCAAATAGTAAAGACCAAAGAGGACTCTGAATACTCCAGACTCTCACACTACAATAAGGGACTGAAGCTTCTCAAAGAAACACTAGAATCTGAGAAACCACAACACAAAGCTCTTGCCTGGTGTTACGTTGGCATCATGTTGGAGAGGAAGGAAGAGTTCACCACTGTGCCCATGTCTATACATGACTGTGGCTACTCAGCCTCTGATCCACTATCCTGCTATGGAACTGCCATAAACCTGGCCAGTGAAGACGCATTTACCCTGAACCTCCTGTCAAAGGTCTTCTTTCTGTTGGGCAAACATGAGATGGCCACAGGGATCTGCAACATGGCCCTAAACGTGCTCCCAGACCCAGAGCTCAACTGGCAGGCATACTGCACCCGTGCCAAGATCAATATGATGCTCTATGCCAGGGACCTACAGAAGGCTAAGCATGGTCATGGTGGAatcccagacagacagaaactaaCTGAGGCCAGAAAAGACTTGGACAAGGTCCTGACTGTTCGTCCATGTCTGCGGACTCACCTGGAGATGGCACAGGTGTACTACTACATGGGTGTAGATGCACTCCAGGAGAGTCTCTTGGTGGATGAGGGAGCAGTGAACAGCGCAATGGTGAGTCTGTCCCATGCCCTACAGATTGAGCTGGGTGATAGCTTGCCGGACCTCCACGTGCTCAGAGGACGCTGTCTCCTGCTGAAGGGGGAGGAGCAGAACGCTGCAGACTGCTTCAAACGGGCCATGGAGTTAGAGAGACCAGGGAGCACAGACACCACAGCCCTGCGCTGCCTCCTACAGGCACTCTTGAATCTGTTCATGCAGGGAGGCCCTGACCCAAGCCTAGCCACCACCCAACTGGAGCTGTGGGTGCAAAAGGCTGAGGAGAGGTACCCTGAGGACATTGTGAAGTCTGAGCTGAGGTGCCTTTACAGGACTCACACAGCAGAGGTCACAGAGTTATCCAGGGCTCTGATCAGGACAGGCAGACTGGACCTAGTGAGGAGGCTTCTGGaaacagtggtgcctaaacagCTGGTTAAGAAGAGACCAATAGCTCGGTCTTTCTCCTGTACATGAAGCAAATATGTGACTTTAGTAGACATACAGGTGCATGACCTAACCAGAACAGACATACAGTAATTAATTAACTTCTTGACAGCATTTCACAGACAAAAATGAACGGCAGCGgtgtactgtattttttaaaaCTGTGATTCTTCTATTATTAActtgcatgttttattttttttaaggaacaACTTTCAGAAAGGTTAGATATACAGAGAAGCCTACAGTTACAGTGTTAAAGCACAGAAGGATATTCCTTTCAAGCTTGCTTTGCAATGCAAAATATGTCAGAAACCTTTGAGTTTCCGTGTAAAATGAGATGACCGCGGCCTTTGAGAGCATTgctgaattgaaaaaaaaaggttgggtgtTTTCATAATGAAATGGCTGTGGAAAGGATGCCCTGTTGGCTCTTCCACAGTGGCTGTAGAAATGAAACCACAAGTAGTTATTGCTGCATAGTAATATTTAAATCATGTCACACTACCTCTCTTTGAGTGGGATATTTCAATGCTCTACCACTATTGACCAGCAGATAGGGGTATACACCATTAGGTTTTGTCTGGTTCATGAAAGGTTCTGTTTTTGGCTATGAATAAAAGACTTTTTGAATCA

Function

GO: NA

KEGG:

id description
K24933 TTC22; tetratricopeptide repeat protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128185 lncRNA upstream 147071 13146305 ~ 13146795 (+) True G95040
TU128168 lncRNA upstream 181546 13107689 ~ 13112320 (+) True G95027
TU128143 lncRNA upstream 193528 13098787 ~ 13100338 (+) False raver2
TU128141 lncRNA upstream 298212 12995235 ~ 12995654 (+) True G95002
TU128136 lncRNA upstream 427615 12865912 ~ 12866251 (+) True G94997
TU128265 lncRNA downstream 30500 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA downstream 30500 13335734 ~ 13342098 (+) False LOC120565776
TU128278 lncRNA downstream 67210 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA downstream 67239 13372473 ~ 13374348 (+) False LOC120564967
TU128288 lncRNA downstream 85589 13390823 ~ 13399617 (+) False LOC120564965
XM_039811755.1 mRNA upstream 35305 13211481 ~ 13258561 (+) False lepr
XM_039811754.1 mRNA upstream 35305 13231121 ~ 13258561 (+) True lepr
XM_039811397.1 mRNA upstream 89497 13168571 ~ 13204369 (+) False dnajc6
XM_039811998.1 mRNA downstream 12542 13317776 ~ 13320697 (+) True LOC120565891
XM_039810377.1 mRNA downstream 23383 13328617 ~ 13335098 (+) True LOC120565057
XM_039810378.1 mRNA downstream 23383 13328617 ~ 13335098 (+) False LOC120565057
XM_039811793.1 mRNA downstream 30536 13335770 ~ 13341951 (+) True LOC120565776
XM_039812029.1 mRNA downstream 51138 13356372 ~ 13359125 (+) True LOC120565910
TU128204 other upstream 73494 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 193421 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1849333 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2045219 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2345620 10946976 ~ 10948246 (+) False si:ch211-162e15.3
XR_005640172.1 other downstream 74164 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1314124 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1505134 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1505134 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 3015260 16320494 ~ 16341048 (+) False kdm4b

Expression Profile