RNA id: XM_039811911.1


Basic Information

Item Value
RNA id XM_039811911.1
length 3807
RNA type mRNA
GC content 0.43
exon number 3
gene id tnfaip8l1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21946176 ~ 21962548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtttgaaactttttttttttacgagtAGGAGGAGGACTCGGGTTACAAATAACTCTTGTAACCGATCTCACTGCAGCCGAGAGAAGAAAACACTCTTTCAATTATTTACACATCTGTGTCTGATACCCCGGTTACAAACTTACAGAACAAGAAGGAGCTGCGAGGGGAGGACGGGTTTCTTTATCGCACAAACAGCGGAGCTCCAACAAAACAAGcgaacaaacaaaacatgctgTGAATGGACTTTTCCCTGCGCTGCCAGGATGAAGACTTGAGATATTTAGTTCAGATTAACTTGTCATCTCGTTGGCTGACCACTCCTGTGTCCCGCTGAGACTTGACCATGGACTCCTTCAGCACCAAGAGCTTAGCCCTGCAGGCGCAGAAGAAGCTGATGAGCAAGATGGCCACCAAGAGCATGGCCAACCTCTTCATCGATGACACCAGCAGCGAAGTGTTGGACGAGCTCTACCGTGTCACCAAGGAGTACACCCGCAACCGCAAAGAGTCGCAGAAGATCATCAAGAACTTGATCAAGATGGTGGTGAAGCTGGGAGTGCTCTACAGAAACAACCAGTTCAACAGTGAGGAGCTGATCCTGGTGGAGAACTTCAGGAAGAAAGTCCACACTCTGGCCATGACGGCGGTCAGTTTCCACCAGATTGAGTTCACCTTTGACCGGCGCGTCATGAGCGCTATTTTGAATGATTGCCGTGAGCTGCTGCACCAGGCCATCAAACGCCACCTGACAGCCAAGAGCCACTCGCGAGTCAACCACGTGTTCAATCACTTCGCTGACTGTGACTTCCTGGCGTGTCTCTACGGGCCCTCGGATGTTTACCGTGCCCACCTGCAGAGGATCTGTAACGGGGTCAACAAGATGCTTGATGAAGGGAACCTCTGACCTCCACTGGCCTCGTCATCAGGCACCTTCACCTCTAGTCACCCCTCATGTACCATCTtgcaatatttctttttaaggTGACATGAACGTTTATGTTTTCCATTTGTTGCTTTATGTTTGTGTGCCTTTTTTAGCCATTACTGTAACACTGAAAGAATCTCGGCTAGTTAGTCCAAAGTCTGTTTCTTCTCCAGTCTGACTTTTTGTTATTTCACAGTAAACCCagcagatgttttattttattatttttattgaatttaaaacTTCATGCTCTTATCAGTATATATTTAGGGATAGGAGCCTTGACAACTGTGCcttgaaaaaacatttttgtcttCATTCCAAGGGCACTATGCTTGCTCTTTCAAAAAGACATGAATCAGGCACATGCCTTCAGTCATATCTCTATGAGGAGCTTTTAATGGACCAAAATGGTTTTGGGGGCACCAGGagaggtgaaaaaaaagaagtgaatttCCATCTTTTCCAAATACCCAAGGACATAAAGAAgtgatattttgtttgttttttccaaaaGTAGTATTGCACTCAATTCTGAACAAGCGCTGTACTGTACTTTCCTGCAATAATGAAACCATGTGAAAAACTGCAGTTGAGTAATCCTGCTTAGCCTGCATTTTACAGCTTTCACCATAATGCACTGAACTCCACTTTGTAGAGAGGCCAGGCCTTTTGTTAGAAGGCACCTATAAACCcagtttttactttttatagtCTGGTTTATAGCCACGACAACAAAGACGACATATTTGGGTCATAGGGGGACCATAAACATGAAGGAATTTGATTGTGCTGTGTATTGTTAAATGTGTTGCAGGCTATATGCTCATCTGCTCAGCAAACTTCAAGATTGTGTCTATAAATGTCATAATCACAGCAGGGAAGTAGCACAATGTGGCACCAGCTGCAAAGGTTGCTCTGGAATTTTTTCAGAGCGGAATAAAGCGCGATCACGGTTGAAGTCATAATAGATGTTGGAGCCCAGGGTCAGTTGTGTTTCAGATTTACCGGTATTGCCTCAGGTTTATCCAAAAAGCACTAAAACTCTGGTTTGAATTCTGACAGATTTGAACTAAAACGACTCCCTATGAGCAGTCAGATGAAAGCCTGGATGAAAAACTGCAGCTCTGTCTATGAAAAGGGCCAGGCAGGGTATAGAGATTAGAGCAGAGACAAACACAGTACCTGATTGTACTCTCCCACTGCAATTACAGTTCCGCACTCTGGGGTGGCATAATGGCCCGGAGCCTGCCTCTGTCGAGCAGCCACTCCATTTTACCACACAGCAGCCAATGTGATGGAGATAACCATCTCTGTTTGCGCAATGCAAGTCCTTTTAATGGAGTgaaaaatgttgttgttgttgcttccTAATAAAGGAGAATATGAATAGTTACTACTATACCTCCCATCCGAACCTCACAGAATagctgtttttcctttttgtctATGTGTTTTTGTATCGCTGAGCCTTTCTGGGAGATTGTTTTGTGCTGCGGACTCATTTTGTAttctgtgtgagagtgtgagtgtttgtgtgcgtaCCTGTGAGAGAATTGGAAATTGAGCCGTGTAATAAGCGCTGTGCTTTTCCAGATAGGATTGCTGAAACTTTAACTTCATCCACAGCAGCTCTGCCAAAGAAACAAAGAGCGATGTTCCTCAAAATGCAATCGTTCTTCCAGAGGAACATTTCAGATAAGAGTATGCACTTGATAATTATAACTCTGGTAACGATGATAATGAAGACAAAGCTGGTGGCTGGTGTGGTTTCGGcccttttttctttattcacaTTTTTTATTCTTAGATGACTTCCTGAGTATATTCTCTTTTGTTAGACCCAATTGACTCTCACTGCATCATTTTGGGATGCCTCGAAGTCAGTCATTTTCCCTAAATCCCCCCAAAGCAGTTGACTTTAATTCTCTTTGGATGCCATTTTCTCCAATCCCTCCACATCTCAGGGTTAGTTTGAATCTCCCTCGGTTTTAAATTCATGACACACTAAGTACAAATCGCCACGGATCTCTGCAACAGCCTCACTTATTTTACTAAGTCCCACAACTAAGCATACTTATCATGTTGCATTTCTACTATTGTAAATTgtgaatcatttttattttcacttatGTACATATTGTTTTTGTGTCCCTGTATTGTATCCAGACGCAACAAATATAAtacaatttactttttttaaagaatacaTTTCTTGTCCTTTTTTGCTCCTCAATCAAGTACAGAGCATCTTCCCATCAGTATGTCGGATGGTGGAATTTTCCAGGCCAGATCAGAGGGTAATCTGACCATGTCTGACCTGGATTTAGTCGACCAAATCCCTTTCCTCCTGCTCCCGGCATTGTTAGGAAGCCATGAAAGCAAACACAAACCCATCTGACTGACAAACAATTGAACTTTGGGTCGTTTCTTTCCACTTCCTGCAGGCCCACGCCACGGTCAAAGGTAGAACAGGATATTAGTAAGATGGAAAGACTTCTTGCTTCTGTTTTTGGAAACCTCAACACTCAGCTGCAGTTtaatttcaagtgttgcatgaGTACCACTCCCCCGGTTTGGGTTTAATCTATCATTAACTTTGCCACTTTTCAGACTTGGGAATGATAATTTGGTCTGTAGCACGTCTGCAGATCCTCCTGCAGCACAGCCTGAAAGGCTACTGCAGTACCAAGTGCCCAATTATCATCTAATggtcatgcatttttttttttttttttgtgaatgcacCCTTGAGTTCAGAGAGTAATGCTATGACTAATCTGGGATGTGAGTACAGTCACGTCTTATTGTCTCTATGTGTACATCTATCTCTTCTTATTTGACTGCGATGTCAAATAAAGCAAAAACGTCCTGACCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131132 lncRNA upstream 1615 21942965 ~ 21944561 (+) False G97170
TU131135 lncRNA upstream 1615 21944082 ~ 21944561 (+) False G97170
TU131133 lncRNA upstream 3772 21941105 ~ 21942404 (+) True G97170
TU131039 lncRNA upstream 201495 21743413 ~ 21744681 (+) True G97096
TU131003 lncRNA upstream 269827 21658550 ~ 21676349 (+) True G97064
TU131148 lncRNA downstream 34865 21997413 ~ 21997743 (+) True G97181
XR_005640290.1 lncRNA downstream 43227 22005775 ~ 22007353 (+) True LOC120565815
TU131159 lncRNA downstream 71249 22033797 ~ 22035674 (+) True G97190
TU131249 lncRNA downstream 128841 22091389 ~ 22093374 (+) True G97263
TU131286 lncRNA downstream 193563 22156111 ~ 22157958 (+) True G97295
XM_039810498.1 mRNA upstream 36978 21895470 ~ 21909198 (+) True ncln
XM_039810501.1 mRNA upstream 36978 21895470 ~ 21909198 (+) False ncln
XM_039810503.1 mRNA upstream 36978 21895470 ~ 21909198 (+) False ncln
XM_039810500.1 mRNA upstream 36978 21895470 ~ 21909198 (+) False ncln
XM_039810499.1 mRNA upstream 36978 21895471 ~ 21909198 (+) False ncln
XM_039811631.1 mRNA downstream 4644 21967192 ~ 21979558 (+) True LOC120565695
XM_039811778.1 mRNA downstream 35371 21997919 ~ 22000097 (+) True LOC120565765
XM_039811780.1 mRNA downstream 37649 22000197 ~ 22002659 (+) True LOC120565766
XM_039811779.1 mRNA downstream 37649 22000197 ~ 22002659 (+) False LOC120565766
XM_039810681.1 mRNA downstream 90809 22053357 ~ 22079019 (+) True zfr2
TU131036 other upstream 164176 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2414499 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3160540 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4073765 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4074329 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 321098 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 522963 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 530409 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 609511 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 609921 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile