RNA id: XM_039812016.1


Basic Information

Item Value
RNA id XM_039812016.1
length 5273
RNA type mRNA
GC content 0.51
exon number 19
gene id sin3b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22134681 ~ 22154333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacTCCTACTCTGGCTTCCGGACGCCAAGACAGACCTCTGCCGCCGaatttaaagagacaggcgatAGTTATTTTAAATACGATAAACGGCAACCATTGTCCCTTAGCTTATTTCCCGACGCTTCTTGTCTCAGCTTGTTTAAATCGATGGTGATGTTTTATCAAAGTCGCAGCGAGTAGCAGCTTGTCTGTCATCACCCTCCACTCTGCTGGATTTTCCGTCCTTTTGCGCTGTAGCGAGACTGTCCAGCTAGGCAAAGTAGGGTTGCTTGCTGGCAGGCTGGCTTCCCGACCGAGAGGAAGGTTTGTCGGCTAGCCAACAACTGGAGGTAACACCGAAGCTTCCCTCTCAAGTTGTGGTAGTGGCTCTCAAGCCTCCTGTCGCCGGGATAATGGCGAAGATTCAGGCGCACAGCACCGCGAAGCAAATAAACCAAATTCAAGACAAGCCTTACGTTATAACACAAAAGcaagtgcagcagcagcacttcCAGAAGCTGAAGGTTGAAGATGCCTTGTCATATCTGGACCAAGTCAAAATTCGTTTTGCAAATGATCCTGGCATATACAATAAGTTTCTGGACATCATGAAAGAGTTCAAGTCACAGAGCATCGACACACCAGGGGTGATAAACCGCGTGTCGCAGCTCTTCCATGGACACCCAGACCTAGTCTTGGGCTTTAATGCCTTCCTACCACCGGGTTATCGGATAGAGGTCCCGAAGAATGGGGTGGCTTTCCTCCAATCTCCGTTCTCCACACAGGTATCCCCAGGACAGCAGGGGAAGAGTGTCACCACCTCTGCAGTGACCGTAACCTCAGGTAGTGCCTCTGCTGTCAACATTGAAGCTGGACCTGCCCAGACCAGCGAAGTCAAGGCGGCCCCATCAGAGTCCCTATCCTCCTCAACCCCAGCAGGACCTCCGGAGCCCCCCAGCCGTCTTTCTCTTCCCCTGACTAGCAGAGAGAGCCAGAATCAGGCGACCACCTCGTCTGTATCCCCACCTGCCTCAGAGACGAGCCCCGTAGAGTTTGACAGTGCCATCAGCTATGTAAATAAGATTAAAAACCGCTTCTTGGATCACCCAGAGATCTACAGAGCATTCCTAGAGATTCTTCACACATATCAGAAGGAGCAGTTGGAGGTGAAGGAAAGTCGAGGCGGCCGAGGCAGTAGTGGGATGACCGAAGATGAGGTGTTTTCTAAAGTTGCAAGTCTTTTCAAAGGGCAAGAAGACCTGCTGGCTGAGTTTGGGCAATTCTTACCTGATGCCAAGAGATCATTGTTCACAGGGAGCTCATTGACAGGAGGGAAAGAGCAGCTTAAAAGGCCGGAGGAGGACGACACGATAACCAAACAGAACAAAAAGAGGCCCAGACCCATACTACTGCAGCACATGTCCCCACTGCTCAAGAAAATGAAGTATTCCTGTACCAAAGATCAGTCCTTTGCTTCAGTTGGCAAACATGGAGTCTTAAGAGAATTCTCCTTCTTTGATAAGGTTCGTCGCCTGTTTAAAAGCCAGGAGGTGTATGAGAACTTCCTGCGCTGCATCGCCTTGTTTAACCAGGAAGTAGTTTCGGGAGCGGAGCTGCTACAGCTAGTCACTCCTTTCCTGGGGAAGTTTCCCGAACTGTACACACAGTTCAAGTCATTTCTGGGGGACAAAGAGCTCTCTCATGCTGTGTCAGGGCTGTCGGATCGTTAcatggaggggggagggggcagGGAGGTGGATTATGCCTCCTGCAAGCGCCTGGGATCCAGCTACAGAGCACTGCCCAAGACCTACCAGCAGCCTAAATGCAGCGGGCGCACTGCCCTATGCAAGGAGgtgtTGAACGACACCTGGGTGTCATTTCCCTCTTGGTCAGAGGACTCCACCTTCGCCAGCTCGAAGAAGACTCCTTATGAGGAGCAGCTGCATCGCTGCGAGGACGAAAGATTTGAGTTGGATGTGGTTCTGGAGACAAATCTGGCCACCATCAGGGTGCTGGAGAGTGTCCAGAAGAAGCTCTCTCGTCTTTCCCCAGAGGACCAGGACCGATTCAGATTAGACGACTGCCTGGGCGGCACCTCTGAGGTCATCCAGCGTCGTGCAGTGTATCGTATCTATGGTGACAAAGCCCCTGAGATCATCGAGGGACTGAAGAGGAGTCCTGCTACCGCTGTGCCTGTGGTGCTCAAGAGGTTGAAAGCCAAGGAGGACGAGTGGAGAGAGGCCCAGCAGGGTTTCAATAAGATTTGGAGAGAGCAGTACGAGAAGGCCTACCTGAAGTCCCTCGACCACCAAGGAGTCAACTTCAAACAGAATGACATGAAGGCCCTACGGTCAAAGAGCCTTCTCAATGAGATTGAGAGTGTCTATGATGAGCGTCAGGAGCAGAGCACAGAAGAGGGCGGAGTTGGCCAGCAGAGCCGCAACGGCTCAGGTGCAGCCTCATCCAGCGAGCCTCACATGGTGTTTACGTACGAGGACAAACAGATCCTGGAGGACGCTGCCTCGCTCATCATCTACCATGTCAAACGTCAGCCCACCATCCACAAAGAGGACAAGGACCACATCAAGCGCATCATCCAGCACTTTGTCCCCGACCTGTACTTCTCCCGCCGTGGTGAGCTCAGTGATACTGAAGACTGGACAGATGAGGAGGTTGAGCctgaggaggggggagagagaggactaGGAGTTGGAGCAgcagcaccaccaccagcaccagCAGGAGCCGGAGGAAATGGTAATTCTAATAATGCatcaggagcagcagcagccacaggTAGTCAGTCTCAACCCCAACCTGCACAGTCCCAACCCCAGCAGCTCAACGGGGAGTCCAGGCGGAGGCGCTGCAGCCCATCCCAACCTGCAGACCCAGAGGCCTCCACCACCTCCAGTAGCACGAGCCAGCCTGCAGGGACTGCCTCATCCACCCCTGGATCGACGCCCATGGAGACGGGCTCAGGTGCACCCGGGGAGAAGGTGGACCTGCGCGACCCTGAAGCAGAGCACCAGAAGGAGCTGGATGGTGTCTACAACCTTTTCTTCGTCAACAACAACTGGTATTTCTTCTTGCGGCTGCACCAGACCCTGTGTACGCGGCTGCTGCGGGTTTACCGACAGGCAGAACGGCAGCTGCTGGAGCACCGAGCTGAGCAGAGCAGGGAGAGGCTGCTGATGGCcgagggaaggagagaaaaagcaTGTGACCTCGCCATGGAGCTCCGCCTCAAACAGCCCAGTGAGGTGGAGTTAGAGGAGTACTACCCTGCCTTCCTGGATATGGTGCGCAGCCTGCTGGATGGCAACCTGGACTCCACACAGTATGAAGACACCCTGAGAGAGATGTTCACCATCCACGCCTACATCGGCTTCACCATCGACAAGGTCATCCACAACATCATTCGGCAGctGCAGCACCTAGTGAGCGACGAGGTGTGTCTGCAGGTGGTTGATCTATACCTGGCTGAGAGGAAGCGGGGGGCAGCGGGGGGTAACCTGTCCTCGCAGTGCGTTAGAGCAGCCTGGGAGACCAGCTACCAGTGGAAAGCTGAGAGAGTCATGGCTGAGGAGAACTGCTTCAAGGTGATGTTTCTCCAAGACAAGGGTCGTGTGACGATGACCATTGAGCTGCTGGACACTGAGGAGGCCCAGGCTGATGACCCGTTAGAtgtacagTGCCTGTCGAGCTACATGGAGCAATTTGTAGGAACTGAGTCCAGTCTGTGTTCTCAAGCCGAGGGCTACTTCTTCAAACCTGTATTTCTGCCTAGGAACCTGCGTCGTTTCCGTCGCTGGCAGGTGCGGCAGGTGGAGGCGATGCGCTGCAGGAGAGAGTGGCACCGCCAGCTAGGCGTGGAGAACGCCGGGAGTCTGGACTGTCGATTTAAACTCAACACTCACAAGATGGTGTTTGTCATGAACTCTGAGGATTACATGTACCGCAGAGGAGCACTCGTCAAGGCCAGGAAGTCGCAGCACAGAGTGGCAGCGAGCCAGCACGAACGCTTTGACAAGTGGCACCAGGGCTGGCTGGCCAATCACGTTACGTCCTCGGCTGGACGCTCGGTGCAGAACTGGCTAATgggtgaggaggaagaggacatgATCCCCTGCAAGACTACCTGCCTATCGACAGAGGTGAAAGGGCAAGCGGTGAACAGATACCAAGTTCATTACAGCGGTAGCAAAGCCCCAGCCTCCCCGTAGAGGCCCGCATAGAGATGGACGTtcagtacacacacaggtaaatgCATGGACGTACAGGACATTCATACACTAAACACAGACATAAACCGCTGCAGTCCCACTTCTCCACCTTCCTCCACTACATGTCCACTCATTCACTTTCACTGATGGATGAAGAAACGCAGTGCAGACTCTGGACTGTTAATACCAGTGGACAGTGAGTCAGTGAATGAGTGCACAGTGAGAGGAGTGAAGACGTGGAGAAAAAGGACCAACACAGACAGTGAAGTAATCAGTGAGAGTAAACTCGGCCCAGGTTGATGGCACGAGTCGGACACGACGGCACAAACGgagctcatcatcatcatcctcataaTTCTAGCTTCTCTGGTGGCACTAAAAGTTGATGGACACGGTTGATCAGGTGAGAAGTTATGAGATCATGAAATTTGTTTCAGAAATGTGAAtgtctgtttatttttcttctttttttaagtcaaGTGTAGTTTTTAGCTTCTAAAGCCAGAGAGCCTtctgttggttggttggtttatGCGTGTTTATATGGAGAGATAATGGTAaacgtgtgtatgtatgtgtatccTGCTCTCTTCATTTTGTCTGTTTGTATGCCCAGTACAGGCTCTACAACTCTAGTCATTGCATTGTTACtgtatgtgcatatatatatatatataacagggatcctgtatttttatatatgcATCTACATGAGTTGATACATCTTAAGATCATGTGGTTCTTTACAGTGTTTGCTGTCAGCCAACTCTTGAtgttttgcattatttttttttttatttttttttttgtgttgtagctAAACAAGTTATCACCAAGGCAACAAGGAGACCTTAAATTAATTGGTTTAATATGGAGGACGCAGTCAAATTATGTATCATATTCATGATACTAAATGTTTACtttgtattgtcttttttttttttttttttttttgcatactgacattgaaaataaaagcaaaatatcAGTGTTAAAATAGAATGTATAACATTTATCCTGTATCAGTTATCATAAAATAAACAACCTAGTTGTGACCTTCTTAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131249 lncRNA upstream 41307 22091389 ~ 22093374 (+) True G97263
TU131159 lncRNA upstream 99007 22033797 ~ 22035674 (+) True G97190
XR_005640290.1 lncRNA upstream 127328 22005775 ~ 22007353 (+) True LOC120565815
TU131148 lncRNA upstream 136938 21997413 ~ 21997743 (+) True G97181
TU131135 lncRNA upstream 190120 21944082 ~ 21944561 (+) False G97170
TU131286 lncRNA downstream 1778 22156111 ~ 22157958 (+) True G97295
TU131289 lncRNA downstream 3724 22158057 ~ 22174393 (+) True G97297
TU131330 lncRNA downstream 159315 22313648 ~ 22316358 (+) True G97335
TU131333 lncRNA downstream 168159 22322492 ~ 22322855 (+) True G97338
TU131429 lncRNA downstream 417421 22571754 ~ 22576548 (+) False LOC120566218
XM_039812017.1 mRNA upstream 344 22124524 ~ 22134337 (+) True haus5
XM_039812020.1 mRNA upstream 10589 22118994 ~ 22124092 (+) False LOC120565906
XM_039812025.1 mRNA downstream 75072 22229405 ~ 22259111 (+) False acbd6
XM_039812024.1 mRNA downstream 75073 22229406 ~ 22259111 (+) True acbd6
XM_039810182.1 mRNA downstream 206198 22360531 ~ 22453997 (+) True LOC120564914
XM_039810184.1 mRNA downstream 304128 22458461 ~ 22485160 (+) True si:dkey-21p1.3
XM_039811777.1 mRNA downstream 331178 22485511 ~ 22491235 (+) True LOC120565764
TU131036 other upstream 352681 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2603004 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3349045 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4262270 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4262834 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 129313 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 331178 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 338624 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 417726 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 418136 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile