RNA id: XM_039812082.1


Basic Information

Item Value
RNA id XM_039812082.1
length 5911
RNA type mRNA
GC content 0.48
exon number 26
gene id eps15
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22591643 ~ 22623535 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTTTGaatcatattttaattgatTCCTGTCGTTGAGATCCAGTGCCAGGTTTTTCAGCggcctctgtctgtgtctggtCTGGCAGCAGCGCAGCGTGAAGGCAGTGGGAAACAGAAACACTATGGCTGCCACTCTGTCTCTTACTCAGcTCTCCAGTGGAAATCCCATCTATGACAAATACTATCGACAGgTTGATCCGACTGGCAGTGGGCGGGTGGCAGCAGCTGATGCAGCCTTGTTCCTGAAGAGGTCGGCCTTGGCTGACTTGGTCCTGGGGAAGATCTGGGATTTGGCAGACTCTGAACGTAAAGGTGCTCTTAACAAGCAGCAATTTTTCATAGCATTGCGGTTGGTGGCCTGTGCTCAAAATGGCCTGGAGGTGGCACTCAAGAGCCTTAATGTGGCTGTTCCTCCCCCGAAATTTCATGACACAAGCAGCCCGCTGttagcaggaggaggaggggctgTTGATGTTCCCTGGGTCGTCAAGcctGAGGAGAAGATGAAGTTTGACTCCATCTTTGAAAGTCTGGGTCCAGTCGGAGGGATTCTAACAGGAGACAAGGTCAAGCCTGTCCTGCTCAACTCCAAACTGCCAGTGGACATCCTCGGCAGGGTGTGGGAGCTCAGTGACATCGACAGAGATGGCACATTGGACAGAGATGAATTTTCTGTGGCCATGTATCTGGTGTACAGAGCCCTGGAGGGGGAGCCTGTTCCCATGTCCCTACCACCTCCCCTGGTTCCACCCTCCAAGAGGAAAAAACCCTCGGTGCCTCCTGTGATGCCCCTGTTACCCTCGCCCCCCTCAGTCAAAGACAGTCGCTCCTCCCACGCTGGCTCTAAGACCATGCCCCTTCCCCCTAAACCCGCCCCAGCTCCTGTCCCAACACCAGCAGCTGCCCCTTGGGTGGTGTCGCCGGCAGACAAAGCAAAGTATGATGAGCTCTTCATCAAGACAGACGGTGACATGGACGGCCTCGTGTCTGGACCTGAAGTCAGAGATATCTTCCTGAAGACCGGGCTGCCCTCTGCGACACTCGCACGCATCTGGGAGCTTTGTGACATTGGAGACATCGGGAAACTGACCCGGGAGCAGTTTGCCCTGGCGCTTCATCTAATCAATCAGAGGCTGACTAAAGGCCTGGAACCTCCTCAGAGTCTCTCCCCAGAGATGATCCCTCCATCTGACAGACAAAACATCAAACAGAACAACGTGGCTAACCTGGCAGCTGACTTCTCTGCCATCAAGGAACTAGACTCTCTCAGTAATGAGATTGTCGAACTACAAAGGGAGAAGATAACCGTGGAAGAGGAGatcaaggagaaggaggaggccaTCAGACAGCGCAGCAATGAAGTGCAGGACTTGCAGGATGAGGTGGCGAGGGAGAGCGAGGTGCTGCAGCGGCTCCAGGTTCAGCGTCAGAAGGTCCAGGAGGCCTTGGAGGAGCTAGACCAACAGAAAAACTCCCTGGAGGAGCAGCTGACCCATATTCGCCAGCAGACCAACCAAGAGACCAATCTGATTTCATCGCTGCAGTCGGAGCATGAGGAGCAGGAACAGAAGATATGTCAGTTTGAGGAGGAGCTGGTCCAGGCCCGAGAAGAGCTCCTGGCTCTGCAGGAGGAGAGCGTGAGGCTGCAGGAGAAGGTCCAGGCCGCTCAGGAGCAGCTCACACCTCTGCAAGAGTCTGTCCGCGACTCCTTTACACAAGTTGCACAGGTTCAGCAGAAACTGAACGAGCTTCAGGTGGAGGAGAGGTCAGTAACTGCCCAACTCAGCTGGAAGAGAGCCCTAGAGGACAGCTCTCCTGTCATGGTCAACGGATCAGCAGGCCCCACTGCAGAGCTGTACCAGGGGGACACCTTCCAGCAGGACCTCTTCCAGGAGGACCAGCCTAAAGAGCTGAAGGAGGAAGAACCAGCTGCTCTCTGCTACCAGCAGAACGAACATTCAGatcaaaaagagaaagaaggaatgagcgagagagaagaggaagaagagaaggaggaagaaagTCTGAAGACTGCAGAGGAGGAAAAGTTGAAACGTGATGCCTTGGATGATCTCTATACCAGTCTAGCCTCCTCTGAGATGTACAACAGTCGGTTGAAGCCACTGGAGAATACAAcgaggGAACACAGTAGCCCTACACCCAACGTCTCCTCGGAGGTCATAGATGATGCAGAGGAATCCCCTAGAGAGAGCCCGCCAAAGGTTGCATCGCCAGAGCCAGAGATCAAACCGGAGTCTGCAGAGTCCCCAGAAAGTACCCCTTCTTCGTTACCGCCTCAAGTCGGCCCTCGCTCTCTGCCACCTCAGACCagccctccctccctgcctgaGATGGACTTTTTCCATTCGGACCCCTTTACTGACCATGATCCATTCAAAGATGATCCATTTGGAAAAGCAGATGTTGCAGATCCATTCGGAGAAGATCCGTTCAAAGGGTCGGACCCCTTTGCTGCAGACTCTTTCTTCCAGGCCTCCAGCGCTCCCTTTGCCTCAGGCGACCCATTCTCTGCCTCAGCTGACCTGTTCGGTACCACAACTGGCGTGCCAGAACCAGACCTGTTTGCAGCCAAGCCGAAGGAAGCAGAAGCTGCACCAGCAGCAGGCCCAGATCCCTTCACTTCCAAACCTACCAATCCAGCTTTAGCAGCCAAGGATCCATTCAGCTCCACAGGGAACAATATGGCCGATTCTGACCTGTTTGGAGGCAAAGTGAACGCCATTGGGGAGGTGGATCCCTTTGGTTCTCAGGACGGAGGGACAGATCCCTTCAGCTGCTCTTTACCCAGCTCTGATCTGGCCGTGGACACTGCAGCATCCAATGACCCGTTCGCTCCAGGTGGTACGACAGTGAACGCCAGCTCAGATCCAGATCCGTTTGCTGCTGTGTTTGGTAATGAATCATTCGGAGGGGGCTTTGCAGATTTCAGTGCTTTGACAAAGTCAAACGGGGCTGACCAGTTTGGCATCAACAATAAGAACCTGTTCCAGGAAGACAGCGAGTCTGTTGGACCCGATGTGCCCCCAGCTCTGCCTCCAAAAACCGGTACGCCAACTAgaccacctcctccacctccagGTAAGAGGTCATCCATCTCCAGAACTGAGTCGTGTGAGTCCTTCCAACGACGAGGGCCCTTTCTCCAACAGCCTTCAGGAgacttctcctcctcttccctgcCTGCCAAGGATCCTTTAGCTGACCCCttcgccccctcctcccctcctcgtCACAACGTACGGGAAGCTGACCGATTTGCCAGCTTTGACAAAcagtgGGATGTACCACCTACAATATCCAACAGAGGAAGACATGATAGAGTGGGCAAAGCGCGAGAGCGAGCGAGAGGAAAAGGAGCGACTTGCCAGGCTCACCCAGCAGGAACAAGAGGACCTGGAGCTGGCCATCGCACTCAGCAAGTCTGAACTCTCTTGAGGACCTCGTCTCTCCCTGCCCTCCccttcccttcctctcctcGTCCACTGACCTGGCTCGGCACGGCACAGCACAGCCTGTCCCAGCCCAGAAAGCACCAAAGCAATATGGGGACTGTATAGGACTGATTCAGCAGCACCGGCTGACCCCATGAAGAGACTTTGTCAGAATGAACCCATCTCTGAATCTTTCAGCGCCCTTCTCCCCAGACTGTGTTCACGATATTGGCATTGCGGTATTGTATTTTTCCATCCTGTTGGTCTTGTTTTGGAGGAGTGGACCAAGATGGAGTGTATGTTTTGAAGAATGGATTGTTGAAAATGAAATGCGGTGAATATGGATTTAGAGATTGCGCCGTTGATTTCAACACCAGGCtacaaatgtaatttatttaatgCACTCAAAACTAGATTGAAATGGCCTTGTCAAAAGTCCTGTCTTTATCCACTAACAGTAtctgtatactttattaaaacTCGACTCACTCTAGCTTCTGAAGTTATATTGAGGATTTCATGAGCTTTCTTTAATTAGAAATAGACTTGCTAATTTTGGAGCACCAAAATCCCCCTAATTTCCTTCCAGCTCTCAGTTAATATTCTGAAACTAAATCTTGAACTGTGTGTAGTTTCAAGACAGTAACAAAGTGTTTTTTGAGGCACTGTAACAAAATCtttcagtctttttttaaatggagtgaCCACTTACTTTTCTAGTCCTGTATTATGGCAGAATACAGGACTAGctgagataaaaaataaataaaagtagccTATGTTTTCAGGACAGGGTAACAGAATTCAACATTTCTACTTGTTTAACTGGAAGTGACCGGTCCTCGGATAGGTGAAACGTGCAAATTTATACTAAAGTTGAACAAATCCATCACAGCTACTACATTCAGCTTCTAGATACTTTAATTTCTTTTAGGTTTTTGTTCTGTCCACAGGTTTGTTTGGGAGATCCTGAAAGGAATTAAACTACTACTATTACAtgtaataattatatattaattaGCATTACATTTCAGGGCACACTACAATGGATTGCACAAAATGAGAACCGAGATAAACATCTCTCCCATCTGAGTCCAACATCAAATACTTATCTTTTTATTAGTATGAAACTTTCAGTTCTGGGCAATCACTGACACATTTGTATTAATGTGGCCTCAGAttaaagaatgttttttttttattaatatgtgGCTGAAAAACAGGTGGGTTTGGACATTAACAGACAAACTAAAATAGTTATGAGTTGTCATTGATACTGTATGAGAAAAACCGATTTATGCCCACTTTACCTGCTTTGTATACTCCTCCATTAGTGTTACTAGAGAATCCTGATAGTTCCAGGGTTAGGCACACATCAGTCTCCCTAAAGCAGTGCGCAATGACACTTCCGTAGCATGGATGCTGTATGTTAACTGagagaaatgtattaaaaaaagtaaCTTTCTCAAGTAGTCAGTTGTCACAAATTTCACACCAGGTGTCATTTCAAAGTGTGCCACTGTTGGTGCTTCTATTGTTAGCATTTGTatgaacttttttattttttccagaatgtttattgttttatttttttcaggagATGCTTCCTCTCTGAGAGAAGAACTGGATTTCAAAGTCTTACACAAAGTCAGTAAAAGTTGATAAGCGCCTCTGTGTTTTGGGTGGAGCAGTTTGTCTTCTGTCTGTGCGCTTCAGGCTCCGTGGGGTTTTAACTTGCCGCTGttgagatatactgtacatcccCGTTGCACTGCATCCACACGCCTGTTGACACCCACACAGCAGTTGGCCAGCCAGTGATCCTTCATCTTCCTGGataattttgtgttttctccCAGAAAATTAACTAAGTTACTTAACGCAGAGTGCTAAACTGTGATAGATGGTTTCTGAACAAGGGAAGGCTTAGTTGAACAGTAGGAGGCCTTTTGTTTTCATTGTCTTTGCTGATTTCTGACCAAACTGTGCACAACATTCTTGGACacttcttccttttttctctcttttcggCCTTGTTAAGAATGAGCATAGTCATAGTTTCCTCTTCTCATGTTTAGCCAGTTTACTGTCTGTGGTTGAGGCTGCACTTCCTACTTGGGGTGTCTCATATTGCAGTTCACATTTATCTTAAATACAAGAGACCAGAAGTCATCCGTCTCTTCCTCACCTTCACAGCTGAGTCTCTTGTCATACCACagtttaattctctcacatttAAAGGCCCCCTGACACGTTACTCTCATTTGTACAGATTCCCTTTACAAATCAAGAACCACTTCTAGGCTTACCCATAATGGGTTTTTAAAACTCAagctaattgtattttattttgtattttctaacgtgtaagaacaaaaaaatcattattTGGAGGTTTAGCCAGAATATGTAATGCATTTAAttgaaacagaataaatattaaACATGTAGTTTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131429 lncRNA upstream 15095 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA upstream 15095 22571795 ~ 22576548 (+) True LOC120566218
TU131333 lncRNA upstream 268788 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 275285 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 417250 22158057 ~ 22174393 (+) True G97297
TU131444 lncRNA downstream 33964 22657499 ~ 22676178 (+) True rnf11b
TU131445 lncRNA downstream 33964 22657499 ~ 22674237 (+) False rnf11b
XR_005640278.1 lncRNA downstream 157072 22780607 ~ 22800145 (+) True LOC120565733
TU131455 lncRNA downstream 157239 22780774 ~ 22799672 (+) False LOC120565733
TU131548 lncRNA downstream 242292 22865827 ~ 22870448 (+) True G97485
XM_039810960.1 mRNA upstream 2324 22584206 ~ 22589319 (+) True calr
XM_039810961.1 mRNA upstream 8988 22577197 ~ 22582655 (+) True tor3a
XM_039812097.1 mRNA upstream 21343 22530087 ~ 22570300 (+) False osbpl9
XM_039812084.1 mRNA downstream 1550 22625085 ~ 22657026 (+) True ttc39a
XM_039812085.1 mRNA downstream 9099 22632634 ~ 22657026 (+) False ttc39a
XM_039812087.1 mRNA downstream 33945 22657480 ~ 22673689 (+) False rnf11b
XM_039811742.1 mRNA downstream 74545 22698080 ~ 22764088 (+) True faf1
XM_039810236.1 mRNA downstream 151473 22775008 ~ 22778191 (+) True dmrta2
XR_005640351.1 other upstream 15441 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 16495 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 16719 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 16971 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 17951 22573630 ~ 22573692 (+) True LOC120566226
TU131620 other downstream 697987 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 851247 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 2158383 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 2228766 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 2244482 24868017 ~ 24873874 (+) False elovl1b

Expression Profile